Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06195

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,413,133	+		BPHYT_RS06190	0.20	+0.2
1,413,221	-		BPHYT_RS06190	0.27	-1.0
1,413,689	+		BPHYT_RS06190	0.69	+2.1
1,414,833	+		BPHYT_RS06195	0.59	+1.1
1,415,052	-		BPHYT_RS06195	0.75	+3.3
1,415,264	-				+0.5
1,415,452	+				-0.6
1,415,614	-				+1.0
1,415,636	+		BPHYT_RS06200	0.20	+0.5
1,415,636	+		BPHYT_RS06200	0.20	+0.3
1,415,636	+		BPHYT_RS06200	0.20	-0.1
1,415,636	+		BPHYT_RS06200	0.20	+0.2
1,415,636	+		BPHYT_RS06200	0.20	+0.1
1,415,637	-		BPHYT_RS06200	0.20	+0.1
1,415,688	+		BPHYT_RS06200	0.24	+2.1
1,415,740	+		BPHYT_RS06200	0.28	+0.0
1,415,883	-		BPHYT_RS06200	0.39	-0.0
1,415,915	+		BPHYT_RS06200	0.42	+0.3
1,416,140	+		BPHYT_RS06200	0.60	-1.7
1,416,290	+		BPHYT_RS06200	0.71	-1.2
1,416,291	-		BPHYT_RS06200	0.72	-1.1