Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06100

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,384,533	+		BPHYT_RS06095	0.46	-0.0
1,384,533	+		BPHYT_RS06095	0.46	-0.0
1,384,683	-		BPHYT_RS06095	0.57	-0.5
1,384,683	-		BPHYT_RS06095	0.57	-1.1
1,384,737	+		BPHYT_RS06095	0.62	-3.9
1,384,841	-		BPHYT_RS06095	0.70	+0.3
1,385,081	+		BPHYT_RS06095	0.88	+0.8
1,385,082	-		BPHYT_RS06095	0.89	-1.4
1,385,121	+				-2.4
1,385,404	+				+0.9
1,385,613	+		BPHYT_RS06100	0.11	+1.5
1,385,665	-		BPHYT_RS06100	0.14	+1.2
1,385,770	-		BPHYT_RS06100	0.19	+0.7
1,386,057	+		BPHYT_RS06100	0.35	+0.4
1,386,249	+		BPHYT_RS06100	0.45	-0.1
1,386,250	-		BPHYT_RS06100	0.45	+0.1
1,386,250	-		BPHYT_RS06100	0.45	-0.4
1,386,280	+		BPHYT_RS06100	0.46	+0.3
1,386,313	-		BPHYT_RS06100	0.48	-0.2
1,386,369	+		BPHYT_RS06100	0.51	+0.3
1,386,369	+		BPHYT_RS06100	0.51	-1.2
1,386,369	+		BPHYT_RS06100	0.51	-0.0
1,386,370	-		BPHYT_RS06100	0.51	-2.1
1,386,550	+		BPHYT_RS06100	0.61	-1.4
1,386,550	+		BPHYT_RS06100	0.61	+0.1
1,386,550	+		BPHYT_RS06100	0.61	-0.2
1,386,551	-		BPHYT_RS06100	0.61	+0.6
1,386,551	-		BPHYT_RS06100	0.61	+1.1
1,386,554	-		BPHYT_RS06100	0.61	+1.3
1,387,267	-				+0.9
1,387,267	-				-1.0
1,387,303	-				+0.1
1,387,413	-				+0.5
1,387,413	-				-0.4
1,387,413	-				-0.7
1,387,431	+				+0.5
1,387,501	-				-0.1
1,387,528	+				+0.3
1,387,528	+				+0.4
1,387,528	+				-0.7
1,387,528	+				-2.2
1,387,712	+		BPHYT_RS06105	0.74	+0.3
1,387,713	-		BPHYT_RS06105	0.75	-0.9
1,388,012	-				-0.4
1,388,087	-				-1.2
1,388,101	+				-0.1
1,388,101	+				+0.8
1,388,102	-				-1.2
1,388,102	-				+0.2
1,388,194	+				-2.2
1,388,195	-				+0.3
1,388,195	-				-0.9