Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06050

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,375,050	+		BPHYT_RS06045	0.44	+0.8
1,375,059	+		BPHYT_RS06045	0.44	+0.0
1,375,252	-		BPHYT_RS06045	0.65	-2.5
1,375,447	-		BPHYT_RS06045	0.85	-1.5
1,375,447	-		BPHYT_RS06045	0.85	-0.7
1,375,557	+				-1.1
1,375,558	-				+3.2
1,375,745	+				+2.2
1,375,751	-				+0.7
1,375,951	-				-1.2
1,375,951	-				+0.7
1,375,974	-				-0.1
1,376,046	+				+1.8
1,376,046	+				-1.1
1,376,046	+				-0.2
1,376,047	-				+0.6
1,376,047	-				+0.1
1,376,322	-		BPHYT_RS06050	0.25	-0.1
1,376,323	+		BPHYT_RS06050	0.25	-0.3
1,376,323	+		BPHYT_RS06050	0.25	-1.1
1,376,323	+		BPHYT_RS06050	0.25	-0.3
1,376,376	-		BPHYT_RS06050	0.29	-0.3
1,376,713	+		BPHYT_RS06050	0.57	+0.9
1,376,713	+		BPHYT_RS06050	0.57	+0.9
1,376,713	+		BPHYT_RS06050	0.57	+2.6
1,376,766	+		BPHYT_RS06050	0.61	+1.4
1,377,073	-		BPHYT_RS06050	0.86	+0.9
1,377,317	+				+0.1
1,377,317	+				-0.1
1,377,318	-				+1.5
1,377,318	-				-1.4
1,377,516	-		BPHYT_RS06055	0.17	-2.4
1,377,672	-		BPHYT_RS06055	0.30	+0.4
1,377,690	-		BPHYT_RS06055	0.32	+0.2
1,378,061	+		BPHYT_RS06055	0.63	+0.4