Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05875

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,333,638	+		BPHYT_RS05870	0.27	+0.8
1,333,647	+		BPHYT_RS05870	0.30	-0.5
1,333,647	+		BPHYT_RS05870	0.30	+0.7
1,333,648	-		BPHYT_RS05870	0.30	-0.2
1,333,648	-		BPHYT_RS05870	0.30	-1.4
1,333,850	-				-1.1
1,334,145	-				-0.8
1,334,266	+		BPHYT_RS05875	0.15	-0.5
1,334,361	-		BPHYT_RS05875	0.24	+0.3
1,334,465	-		BPHYT_RS05875	0.34	-1.6
1,334,570	-		BPHYT_RS05875	0.44	-0.8
1,334,683	+		BPHYT_RS05875	0.55	+0.5
1,334,684	-		BPHYT_RS05875	0.55	-1.4
1,334,692	-		BPHYT_RS05875	0.55	+1.5
1,334,772	+		BPHYT_RS05875	0.63	+0.1
1,334,798	+		BPHYT_RS05875	0.65	-0.3
1,334,874	+		BPHYT_RS05875	0.72	-1.5
1,335,023	+		BPHYT_RS05875	0.86	+0.4
1,335,052	-		BPHYT_RS05875	0.89	+0.4
1,335,071	+				-0.5
1,335,191	-				-1.3
1,335,275	-				-1.1
1,335,406	+				+0.5
1,335,433	-				-0.1
1,335,599	-		BPHYT_RS05880	0.61	+0.9
1,335,599	-		BPHYT_RS05880	0.61	+3.5
1,335,601	+		BPHYT_RS05880	0.62	+1.8
1,335,656	+				+0.3
1,335,725	-				+1.0
1,335,877	+				-2.1
1,335,947	-				-1.9