Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05870

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,333,638	+		BPHYT_RS05870	0.27	+0.8
1,333,647	+		BPHYT_RS05870	0.30	-0.5
1,333,647	+		BPHYT_RS05870	0.30	+0.7
1,333,648	-		BPHYT_RS05870	0.30	-0.2
1,333,648	-		BPHYT_RS05870	0.30	-1.4
1,333,850	-				-1.1
1,334,145	-				-0.8
1,334,266	+		BPHYT_RS05875	0.15	-0.5
1,334,361	-		BPHYT_RS05875	0.24	+0.3
1,334,465	-		BPHYT_RS05875	0.34	-1.6
1,334,570	-		BPHYT_RS05875	0.44	-0.8
1,334,683	+		BPHYT_RS05875	0.55	+0.5
1,334,684	-		BPHYT_RS05875	0.55	-1.4
1,334,692	-		BPHYT_RS05875	0.55	+1.5
1,334,772	+		BPHYT_RS05875	0.63	+0.1
1,334,798	+		BPHYT_RS05875	0.65	-0.3