Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05860

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,330,190	-				-0.3
1,330,203	-				+0.5
1,330,227	+				+0.9
1,330,228	-				+1.9
1,330,391	+				+0.1
1,330,391	+				-0.1
1,330,391	+				-1.4
1,330,441	+				-0.5
1,330,761	-		BPHYT_RS05855	0.43	+0.6
1,330,761	-		BPHYT_RS05855	0.43	-0.3
1,330,895	-		BPHYT_RS05855	0.62	-1.5
1,330,952	-		BPHYT_RS05855	0.69	+1.7
1,330,977	-		BPHYT_RS05855	0.73	+0.2
1,331,012	+		BPHYT_RS05855	0.78	-0.7
1,331,012	+		BPHYT_RS05855	0.78	-0.1