Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05835 and BPHYT_RS05840 overlap by 13 nucleotides BPHYT_RS05840 and BPHYT_RS05845 overlap by 4 nucleotides BPHYT_RS05845 and BPHYT_RS05850 are separated by 13 nucleotides BPHYT_RS05850 and BPHYT_RS05855 are separated by 511 nucleotides
BPHYT_RS05835: BPHYT_RS05835 - hypothetical protein, at 1,328,441 to 1,328,845
_RS05835
BPHYT_RS05840: BPHYT_RS05840 - hypothetical protein, at 1,328,833 to 1,329,240
_RS05840
BPHYT_RS05845: BPHYT_RS05845 - hypothetical protein, at 1,329,237 to 1,329,659
_RS05845
BPHYT_RS05850: BPHYT_RS05850 - hypothetical protein, at 1,329,673 to 1,329,930
_RS05850
BPHYT_RS05855: BPHYT_RS05855 - restriction endonuclease subunit M, at 1,330,442 to 1,331,176
_RS05855
Position (kb) 1329
1330 Strain fitness (log2 ratio) -1
0
1
2 at 1328.685 kb on - strand, within BPHYT_RS05835 at 1328.705 kb on + strand, within BPHYT_RS05835 at 1328.876 kb on + strand, within BPHYT_RS05840 at 1328.877 kb on - strand, within BPHYT_RS05840 at 1328.893 kb on + strand, within BPHYT_RS05840 at 1328.893 kb on + strand, within BPHYT_RS05840 at 1328.893 kb on + strand, within BPHYT_RS05840 at 1329.558 kb on + strand, within BPHYT_RS05845 at 1329.559 kb on - strand, within BPHYT_RS05845 at 1329.669 kb on - strand at 1329.734 kb on + strand, within BPHYT_RS05850 at 1329.849 kb on - strand, within BPHYT_RS05850 at 1330.031 kb on + strand at 1330.190 kb on - strand at 1330.203 kb on - strand at 1330.227 kb on + strand at 1330.228 kb on - strand at 1330.391 kb on + strand at 1330.391 kb on + strand at 1330.391 kb on + strand at 1330.441 kb on + strand at 1330.761 kb on - strand, within BPHYT_RS05855 at 1330.761 kb on - strand, within BPHYT_RS05855 at 1330.895 kb on - strand, within BPHYT_RS05855
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 1,328,685 - BPHYT_RS05835 0.60 -0.3 1,328,705 + BPHYT_RS05835 0.65 +0.3 1,328,876 + BPHYT_RS05840 0.11 -0.8 1,328,877 - BPHYT_RS05840 0.11 -0.4 1,328,893 + BPHYT_RS05840 0.15 -1.5 1,328,893 + BPHYT_RS05840 0.15 +0.6 1,328,893 + BPHYT_RS05840 0.15 -0.1 1,329,558 + BPHYT_RS05845 0.76 +0.2 1,329,559 - BPHYT_RS05845 0.76 -0.3 1,329,669 - +1.2 1,329,734 + BPHYT_RS05850 0.24 +0.5 1,329,849 - BPHYT_RS05850 0.68 +1.0 1,330,031 + -1.3 1,330,190 - -0.3 1,330,203 - +0.5 1,330,227 + +0.9 1,330,228 - +1.9 1,330,391 + +0.1 1,330,391 + -0.1 1,330,391 + -1.4 1,330,441 + -0.5 1,330,761 - BPHYT_RS05855 0.43 +0.6 1,330,761 - BPHYT_RS05855 0.43 -0.3 1,330,895 - BPHYT_RS05855 0.62 -1.5
Or see this region's nucleotide sequence