Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05770

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,312,281	+		BPHYT_RS05765	0.51	-0.5
1,312,501	+		BPHYT_RS05765	0.66	-0.5
1,312,546	-		BPHYT_RS05765	0.69	+0.2
1,312,992	+				-0.3
1,312,992	+				+0.5
1,313,004	+				+0.6
1,313,005	-				-2.7
1,313,005	-				-0.6
1,313,005	-				-0.3
1,313,016	+				+0.8
1,313,263	-				-0.8
1,313,263	-				-0.7
1,313,739	+		BPHYT_RS05770	0.30	+1.2
1,313,889	+		BPHYT_RS05770	0.37	+0.4
1,314,346	+		BPHYT_RS05770	0.60	+0.3
1,314,473	-		BPHYT_RS05770	0.66	-0.5
1,314,478	+		BPHYT_RS05770	0.66	+0.9
1,314,599	-		BPHYT_RS05770	0.72	-1.4
1,314,640	+		BPHYT_RS05770	0.75	-0.4
1,314,641	-		BPHYT_RS05770	0.75	-0.7
1,314,641	-		BPHYT_RS05770	0.75	+0.1
1,314,641	-		BPHYT_RS05770	0.75	-0.3
1,314,739	-		BPHYT_RS05770	0.79	+0.3
1,314,875	-		BPHYT_RS05770	0.86	+1.0
1,314,875	-		BPHYT_RS05770	0.86	+1.8
1,315,009	+				-0.7
1,315,040	-				-1.3
1,315,150	+				+0.1
1,315,150	+				-0.9
1,315,151	-				+0.6
1,315,376	-		BPHYT_RS05775	0.43	-0.8
1,315,393	+		BPHYT_RS05775	0.48	+0.5
1,315,722	+		BPHYT_RS05780	0.52	-1.1
1,315,722	+		BPHYT_RS05780	0.52	-0.9
1,315,735	-		BPHYT_RS05780	0.56	-0.1