Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05670

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,293,918	+		BPHYT_RS05665	0.22	-0.1
1,294,032	-		BPHYT_RS05665	0.33	-1.5
1,294,032	-		BPHYT_RS05665	0.33	-0.9
1,294,207	+		BPHYT_RS05665	0.49	-0.5
1,294,208	-				+2.9
1,294,552	-		BPHYT_RS05665	0.80	+0.2
1,294,706	+				+0.0
1,294,707	-				-0.0
1,294,714	+				-3.3
1,294,754	-				-0.7
1,294,756	+				-0.1
1,294,785	+				-0.9
1,294,786	-				-0.1
1,295,274	-		BPHYT_RS05670	0.35	-0.2
1,295,291	-		BPHYT_RS05670	0.37	+0.7
1,295,324	-		BPHYT_RS05670	0.39	-2.0
1,295,432	-		BPHYT_RS05670	0.49	-0.1
1,295,607	-		BPHYT_RS05670	0.64	+0.1
1,295,802	-		BPHYT_RS05670	0.81	+0.2
1,295,802	-		BPHYT_RS05670	0.81	-2.9
1,295,850	+		BPHYT_RS05670	0.86	-2.1
1,295,850	+		BPHYT_RS05670	0.86	-1.8
1,295,851	-		BPHYT_RS05670	0.86	+0.2
1,295,959	+				-0.4
1,296,011	+				+0.7
1,296,209	-		BPHYT_RS05675	0.20	+0.2
1,296,209	-		BPHYT_RS05675	0.20	-1.6
1,296,228	+		BPHYT_RS05675	0.22	+1.8
1,296,228	+		BPHYT_RS05675	0.22	-0.4
1,296,232	+		BPHYT_RS05675	0.23	+0.9
1,296,233	-		BPHYT_RS05675	0.23	-0.9
1,296,233	-		BPHYT_RS05675	0.23	-1.1
1,296,233	-		BPHYT_RS05675	0.23	-0.3
1,296,354	+		BPHYT_RS05675	0.35	+0.5
1,296,538	+		BPHYT_RS05675	0.53	-0.1
1,296,635	-				+1.3
1,296,635	-		BPHYT_RS05675	0.63	+2.9
1,296,750	-		BPHYT_RS05675	0.74	-1.7
1,296,816	+		BPHYT_RS05675	0.80	+0.7
1,296,925	+				-1.6
1,296,926	-				-1.1