Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05525 and BPHYT_RS05530 are separated by 91 nucleotides BPHYT_RS05530 and BPHYT_RS05535 are separated by 211 nucleotides BPHYT_RS05535 and BPHYT_RS05540 are separated by 708 nucleotides
BPHYT_RS05525: BPHYT_RS05525 - sensor histidine kinase, at 1,268,016 to 1,269,335
_RS05525
BPHYT_RS05530: BPHYT_RS05530 - hypothetical protein, at 1,269,427 to 1,269,693
_RS05530
BPHYT_RS05535: BPHYT_RS05535 - diguanylate cyclase, at 1,269,905 to 1,271,596
_RS05535
BPHYT_RS05540: BPHYT_RS05540 - sulfonate ABC transporter permease, at 1,272,305 to 1,274,056
_RS05540
Position (kb) 1269
1270
1271
1272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1268.919 kb on - strand, within BPHYT_RS05525 at 1269.176 kb on + strand, within BPHYT_RS05525 at 1269.336 kb on + strand at 1269.336 kb on + strand at 1269.336 kb on + strand at 1269.337 kb on - strand at 1269.337 kb on - strand at 1269.429 kb on - strand at 1269.444 kb on + strand at 1269.444 kb on + strand at 1269.445 kb on - strand at 1269.478 kb on - strand, within BPHYT_RS05530 at 1269.509 kb on + strand, within BPHYT_RS05530 at 1269.521 kb on + strand, within BPHYT_RS05530 at 1269.522 kb on - strand, within BPHYT_RS05530 at 1269.624 kb on - strand, within BPHYT_RS05530 at 1269.731 kb on - strand at 1269.997 kb on - strand at 1270.370 kb on + strand, within BPHYT_RS05535 at 1270.370 kb on + strand, within BPHYT_RS05535 at 1270.371 kb on - strand, within BPHYT_RS05535 at 1270.398 kb on + strand, within BPHYT_RS05535 at 1270.522 kb on - strand, within BPHYT_RS05535 at 1270.780 kb on + strand, within BPHYT_RS05535 at 1270.781 kb on - strand, within BPHYT_RS05535 at 1270.781 kb on - strand at 1270.785 kb on - strand, within BPHYT_RS05535 at 1270.809 kb on + strand, within BPHYT_RS05535 at 1270.809 kb on + strand, within BPHYT_RS05535 at 1270.809 kb on + strand, within BPHYT_RS05535 at 1271.328 kb on + strand, within BPHYT_RS05535 at 1271.329 kb on - strand, within BPHYT_RS05535 at 1271.329 kb on - strand, within BPHYT_RS05535 at 1271.496 kb on - strand at 1271.496 kb on - strand at 1271.631 kb on + strand at 1271.631 kb on + strand at 1271.632 kb on - strand at 1271.689 kb on - strand at 1271.771 kb on - strand at 1271.771 kb on - strand at 1271.987 kb on + strand at 1271.988 kb on - strand at 1271.988 kb on - strand at 1272.023 kb on + strand at 1272.024 kb on - strand at 1272.033 kb on + strand at 1272.034 kb on - strand at 1272.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 1,268,919 - BPHYT_RS05525 0.68 -1.0 1,269,176 + BPHYT_RS05525 0.88 -1.5 1,269,336 + -0.9 1,269,336 + +0.2 1,269,336 + +0.2 1,269,337 - -0.7 1,269,337 - -0.1 1,269,429 - -0.0 1,269,444 + +0.1 1,269,444 + +0.2 1,269,445 - -1.3 1,269,478 - BPHYT_RS05530 0.19 +1.7 1,269,509 + BPHYT_RS05530 0.31 -0.9 1,269,521 + BPHYT_RS05530 0.35 -0.7 1,269,522 - BPHYT_RS05530 0.36 -0.0 1,269,624 - BPHYT_RS05530 0.74 -0.7 1,269,731 - +2.1 1,269,997 - +0.6 1,270,370 + BPHYT_RS05535 0.27 -0.8 1,270,370 + BPHYT_RS05535 0.27 -1.4 1,270,371 - BPHYT_RS05535 0.28 -1.2 1,270,398 + BPHYT_RS05535 0.29 -3.1 1,270,522 - BPHYT_RS05535 0.36 -0.6 1,270,780 + BPHYT_RS05535 0.52 -0.9 1,270,781 - BPHYT_RS05535 0.52 -0.9 1,270,781 - -0.1 1,270,785 - BPHYT_RS05535 0.52 -0.3 1,270,809 + BPHYT_RS05535 0.53 -0.4 1,270,809 + BPHYT_RS05535 0.53 +1.7 1,270,809 + BPHYT_RS05535 0.53 +0.6 1,271,328 + BPHYT_RS05535 0.84 +0.3 1,271,329 - BPHYT_RS05535 0.84 -0.2 1,271,329 - BPHYT_RS05535 0.84 -0.3 1,271,496 - -0.1 1,271,496 - +0.5 1,271,631 + -0.3 1,271,631 + -0.1 1,271,632 - -1.0 1,271,689 - -1.9 1,271,771 - -1.4 1,271,771 - -1.4 1,271,987 + +0.3 1,271,988 - +1.5 1,271,988 - -0.9 1,272,023 + +0.5 1,272,024 - +0.9 1,272,033 + -0.9 1,272,034 - +0.9 1,272,174 + -2.2
Or see this region's nucleotide sequence