Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05475

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,256,347	+		BPHYT_RS05465	0.75	+0.4
1,256,347	+		BPHYT_RS05465	0.75	+0.6
1,256,348	-		BPHYT_RS05465	0.75	+1.0
1,256,370	+		BPHYT_RS05465	0.76	-0.6
1,256,370	+		BPHYT_RS05465	0.76	-0.3
1,256,371	-		BPHYT_RS05465	0.76	-0.6
1,256,371	-		BPHYT_RS05465	0.76	+0.1
1,256,410	-		BPHYT_RS05465	0.78	-1.7
1,256,525	+		BPHYT_RS05465	0.84	+0.7
1,256,716	+				-0.6
1,256,862	+				-0.2
1,257,046	-		BPHYT_RS05470	0.42	+0.3
1,257,122	-		BPHYT_RS05470	0.65	+0.1
1,257,285	+				-0.3
1,257,285	+				+0.7
1,257,285	+				+1.8
1,257,286	-				-1.3
1,257,472	-		BPHYT_RS05475	0.19	+0.1
1,257,474	+		BPHYT_RS05475	0.20	-1.0
1,257,475	-		BPHYT_RS05475	0.20	-0.5
1,257,475	-		BPHYT_RS05475	0.20	-0.4
1,257,532	-		BPHYT_RS05475	0.25	-1.8
1,257,565	-		BPHYT_RS05475	0.27	+0.2
1,257,600	+		BPHYT_RS05475	0.30	-0.4
1,258,176	+		BPHYT_RS05475	0.80	+0.0
1,258,177	-		BPHYT_RS05475	0.80	-0.8
1,258,738	+		BPHYT_RS05480	0.11	-2.4
1,258,739	-		BPHYT_RS05480	0.11	+0.7
1,258,739	-				+0.9
1,258,861	-		BPHYT_RS05480	0.18	-0.3
1,258,903	-		BPHYT_RS05480	0.20	-2.6
1,258,952	-		BPHYT_RS05480	0.23	+2.1
1,259,149	+		BPHYT_RS05480	0.35	+1.6
1,259,224	+		BPHYT_RS05480	0.39	+0.4