Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05125

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,181,452	+				+0.1
1,181,555	+		BPHYT_RS05120	0.12	-0.6
1,181,556	-		BPHYT_RS05120	0.12	-5.0
1,181,568	-		BPHYT_RS05120	0.13	-1.1
1,181,710	-		BPHYT_RS05120	0.30	-3.7
1,181,710	-		BPHYT_RS05120	0.30	-2.0
1,181,880	-		BPHYT_RS05120	0.50	+0.1
1,181,880	-		BPHYT_RS05120	0.50	-1.9
1,181,880	-		BPHYT_RS05120	0.50	-1.7
1,181,982	-		BPHYT_RS05120	0.62	-2.9
1,182,032	+		BPHYT_RS05120	0.68	-2.1
1,182,569	-		BPHYT_RS05125	0.21	-2.5
1,182,728	+		BPHYT_RS05125	0.34	-2.7
1,182,728	+		BPHYT_RS05125	0.34	-3.3
1,182,729	-		BPHYT_RS05125	0.34	-1.6
1,182,729	-		BPHYT_RS05125	0.34	-1.0
1,182,750	-		BPHYT_RS05125	0.36	-0.6
1,182,780	-		BPHYT_RS05125	0.38	-2.1
1,182,842	+		BPHYT_RS05125	0.43	-3.6
1,182,842	+		BPHYT_RS05125	0.43	-0.9
1,182,859	+		BPHYT_RS05125	0.45	+0.5
1,183,071	-		BPHYT_RS05125	0.62	-2.0
1,183,452	-				-0.4
1,183,461	-				+0.2
1,183,461	-				-1.6
1,183,766	+		BPHYT_RS05130	0.46	-1.0
1,183,767	-		BPHYT_RS05130	0.46	-1.4
1,183,767	-		BPHYT_RS05130	0.46	+1.0
1,183,887	+		BPHYT_RS05130	0.70	+0.0
1,183,888	-		BPHYT_RS05130	0.70	-1.7
1,184,108	-				-0.1
1,184,110	-				-0.6
1,184,110	-				-0.8
1,184,158	+				+0.7
1,184,158	+				+0.3
1,184,159	-				+0.9
1,184,370	-				-1.0