Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05105 and BPHYT_RS05110 are separated by 206 nucleotides BPHYT_RS05110 and BPHYT_RS05115 are separated by 220 nucleotides BPHYT_RS05115 and BPHYT_RS05120 overlap by 4 nucleotides BPHYT_RS05120 and BPHYT_RS05125 are separated by 12 nucleotides
BPHYT_RS05105: BPHYT_RS05105 - serine--tRNA ligase, at 1,178,342 to 1,179,637
_RS05105
BPHYT_RS05110: BPHYT_RS05110 - tRNA-Ser, at 1,179,844 to 1,179,934
_RS05110
BPHYT_RS05115: BPHYT_RS05115 - NADH-ubiquinone oxidoreductase subunit 6, at 1,180,155 to 1,181,456
_RS05115
BPHYT_RS05120: BPHYT_RS05120 - hypothetical protein, at 1,181,453 to 1,182,304
_RS05120
BPHYT_RS05125: BPHYT_RS05125 - cyclopropane-fatty-acyl-phospholipid synthase, at 1,182,317 to 1,183,528
_RS05125
Position (kb) 1180
1181
1182 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1179.662 kb on + strand at 1179.663 kb on - strand at 1180.078 kb on + strand at 1180.079 kb on - strand at 1180.079 kb on - strand at 1180.311 kb on - strand, within BPHYT_RS05115 at 1180.403 kb on - strand, within BPHYT_RS05115 at 1180.831 kb on - strand, within BPHYT_RS05115 at 1180.831 kb on - strand, within BPHYT_RS05115 at 1180.841 kb on + strand, within BPHYT_RS05115 at 1180.841 kb on + strand, within BPHYT_RS05115 at 1180.841 kb on + strand, within BPHYT_RS05115 at 1180.842 kb on - strand, within BPHYT_RS05115 at 1180.843 kb on + strand, within BPHYT_RS05115 at 1180.844 kb on - strand, within BPHYT_RS05115 at 1181.040 kb on + strand, within BPHYT_RS05115 at 1181.119 kb on - strand, within BPHYT_RS05115 at 1181.166 kb on + strand, within BPHYT_RS05115 at 1181.182 kb on + strand, within BPHYT_RS05115 at 1181.452 kb on + strand at 1181.555 kb on + strand, within BPHYT_RS05120 at 1181.556 kb on - strand, within BPHYT_RS05120 at 1181.568 kb on - strand, within BPHYT_RS05120 at 1181.710 kb on - strand, within BPHYT_RS05120 at 1181.710 kb on - strand, within BPHYT_RS05120 at 1181.880 kb on - strand, within BPHYT_RS05120 at 1181.880 kb on - strand, within BPHYT_RS05120 at 1181.880 kb on - strand, within BPHYT_RS05120 at 1181.982 kb on - strand, within BPHYT_RS05120 at 1182.032 kb on + strand, within BPHYT_RS05120
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 1,179,662 + -1.3 1,179,663 - +1.4 1,180,078 + -0.0 1,180,079 - -1.4 1,180,079 - -0.5 1,180,311 - BPHYT_RS05115 0.12 -1.0 1,180,403 - BPHYT_RS05115 0.19 -1.0 1,180,831 - BPHYT_RS05115 0.52 +0.0 1,180,831 - BPHYT_RS05115 0.52 -1.4 1,180,841 + BPHYT_RS05115 0.53 -1.9 1,180,841 + BPHYT_RS05115 0.53 -0.7 1,180,841 + BPHYT_RS05115 0.53 -1.0 1,180,842 - BPHYT_RS05115 0.53 -0.9 1,180,843 + BPHYT_RS05115 0.53 -0.0 1,180,844 - BPHYT_RS05115 0.53 -2.6 1,181,040 + BPHYT_RS05115 0.68 -1.4 1,181,119 - BPHYT_RS05115 0.74 -2.5 1,181,166 + BPHYT_RS05115 0.78 -1.8 1,181,182 + BPHYT_RS05115 0.79 -0.6 1,181,452 + +0.1 1,181,555 + BPHYT_RS05120 0.12 -0.6 1,181,556 - BPHYT_RS05120 0.12 -5.0 1,181,568 - BPHYT_RS05120 0.13 -1.1 1,181,710 - BPHYT_RS05120 0.30 -3.7 1,181,710 - BPHYT_RS05120 0.30 -2.0 1,181,880 - BPHYT_RS05120 0.50 +0.1 1,181,880 - BPHYT_RS05120 0.50 -1.9 1,181,880 - BPHYT_RS05120 0.50 -1.7 1,181,982 - BPHYT_RS05120 0.62 -2.9 1,182,032 + BPHYT_RS05120 0.68 -2.1
Or see this region's nucleotide sequence