Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05050

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,163,055	+		BPHYT_RS05045	0.11	-1.7
1,163,216	+		BPHYT_RS05045	0.28	-0.0
1,163,298	+		BPHYT_RS05045	0.37	+0.1
1,163,299	-		BPHYT_RS05045	0.37	+0.4
1,163,581	+		BPHYT_RS05045	0.68	-0.9
1,163,676	+		BPHYT_RS05045	0.79	+0.0
1,163,676	+		BPHYT_RS05045	0.79	-0.0
1,163,676	+		BPHYT_RS05045	0.79	+2.9
1,163,767	+		BPHYT_RS05045	0.88	+0.4
1,163,846	+				+0.6
1,163,901	+				-1.6
1,163,902	-				+0.8
1,163,902	-				+0.3
1,163,920	+				+0.5
1,163,921	-				-0.5
1,163,922	+				-0.1
1,164,255	+		BPHYT_RS05050	0.37	-1.3
1,164,330	+		BPHYT_RS05050	0.48	-0.6
1,164,360	+		BPHYT_RS05050	0.53	+0.7
1,164,360	+		BPHYT_RS05050	0.53	+0.6
1,164,361	-				+2.5
1,164,361	-		BPHYT_RS05050	0.53	+1.2
1,164,361	-		BPHYT_RS05050	0.53	+0.1
1,164,361	-		BPHYT_RS05050	0.53	+0.3
1,164,634	-				+1.3
1,164,654	+				-0.1
1,164,691	-				-0.7
1,164,782	+				+0.8
1,164,802	-				-0.0
1,164,817	+				-1.1
1,164,853	-				-0.8
1,164,934	+				-0.8
1,164,934	+				-0.1
1,165,303	+		BPHYT_RS05055	0.23	-0.3
1,165,304	-		BPHYT_RS05055	0.24	-0.2
1,165,304	-		BPHYT_RS05055	0.24	+1.0
1,165,304	-		BPHYT_RS05055	0.24	-0.7
1,165,599	-		BPHYT_RS05055	0.43	+0.2
1,165,599	-		BPHYT_RS05055	0.43	-0.4