Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04165 and BPHYT_RS04170 are separated by 38 nucleotides BPHYT_RS04170 and BPHYT_RS04175 are separated by 309 nucleotides BPHYT_RS04175 and BPHYT_RS04180 are separated by 432 nucleotides
BPHYT_RS04165: BPHYT_RS04165 - hypothetical protein, at 956,368 to 956,772
_RS04165
BPHYT_RS04170: BPHYT_RS04170 - hypothetical protein, at 956,811 to 957,092
_RS04170
BPHYT_RS04175: BPHYT_RS04175 - hypothetical protein, at 957,402 to 958,118
_RS04175
BPHYT_RS04180: BPHYT_RS04180 - sugar ABC transporter substrate-binding protein, at 958,551 to 959,798
_RS04180
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1
2 at 956.405 kb on - strand at 956.527 kb on + strand, within BPHYT_RS04165 at 956.527 kb on + strand, within BPHYT_RS04165 at 956.619 kb on + strand, within BPHYT_RS04165 at 956.772 kb on + strand at 956.772 kb on + strand at 956.772 kb on + strand at 956.800 kb on - strand at 956.872 kb on - strand, within BPHYT_RS04170 at 956.968 kb on + strand, within BPHYT_RS04170 at 956.969 kb on - strand, within BPHYT_RS04170 at 957.104 kb on + strand at 957.249 kb on + strand at 957.352 kb on - strand at 957.508 kb on + strand, within BPHYT_RS04175 at 957.508 kb on + strand, within BPHYT_RS04175 at 957.508 kb on + strand, within BPHYT_RS04175 at 957.509 kb on - strand, within BPHYT_RS04175 at 957.601 kb on + strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.872 kb on - strand, within BPHYT_RS04175 at 957.917 kb on - strand, within BPHYT_RS04175 at 957.958 kb on - strand, within BPHYT_RS04175 at 958.096 kb on + strand at 958.096 kb on + strand at 958.202 kb on + strand at 958.367 kb on + strand at 958.368 kb on - strand at 958.389 kb on + strand at 958.447 kb on + strand at 958.492 kb on + strand at 958.552 kb on + strand at 958.638 kb on - strand at 958.730 kb on - strand, within BPHYT_RS04180 at 958.798 kb on + strand, within BPHYT_RS04180 at 958.799 kb on - strand, within BPHYT_RS04180 at 958.916 kb on - strand, within BPHYT_RS04180 at 958.916 kb on - strand, within BPHYT_RS04180 at 958.934 kb on + strand, within BPHYT_RS04180 at 958.956 kb on - strand, within BPHYT_RS04180 at 958.956 kb on - strand, within BPHYT_RS04180
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 956,405 - +0.9 956,527 + BPHYT_RS04165 0.39 +1.5 956,527 + BPHYT_RS04165 0.39 +0.1 956,619 + BPHYT_RS04165 0.62 +0.5 956,772 + -0.6 956,772 + -0.6 956,772 + +0.4 956,800 - +0.2 956,872 - BPHYT_RS04170 0.22 -0.9 956,968 + BPHYT_RS04170 0.56 -1.4 956,969 - BPHYT_RS04170 0.56 +1.7 957,104 + +1.7 957,249 + +2.4 957,352 - +0.5 957,508 + BPHYT_RS04175 0.15 +1.8 957,508 + BPHYT_RS04175 0.15 -0.3 957,508 + BPHYT_RS04175 0.15 +0.3 957,509 - BPHYT_RS04175 0.15 -1.6 957,601 + BPHYT_RS04175 0.28 -1.7 957,669 - BPHYT_RS04175 0.37 +1.9 957,669 - BPHYT_RS04175 0.37 -0.5 957,697 + BPHYT_RS04175 0.41 -0.4 957,697 + BPHYT_RS04175 0.41 -0.6 957,872 - BPHYT_RS04175 0.66 -1.1 957,917 - BPHYT_RS04175 0.72 +0.9 957,958 - BPHYT_RS04175 0.78 -1.3 958,096 + -2.2 958,096 + +0.7 958,202 + +0.5 958,367 + +0.6 958,368 - +0.6 958,389 + -1.0 958,447 + +1.8 958,492 + -0.3 958,552 + -0.2 958,638 - -0.4 958,730 - BPHYT_RS04180 0.14 -0.6 958,798 + BPHYT_RS04180 0.20 -0.2 958,799 - BPHYT_RS04180 0.20 +0.3 958,916 - BPHYT_RS04180 0.29 +1.5 958,916 - BPHYT_RS04180 0.29 +0.3 958,934 + BPHYT_RS04180 0.31 -1.4 958,956 - BPHYT_RS04180 0.32 +0.9 958,956 - BPHYT_RS04180 0.32 +0.2
Or see this region's nucleotide sequence