Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04155 and BPHYT_RS04160 are separated by 514 nucleotides BPHYT_RS04160 and BPHYT_RS04165 are separated by 217 nucleotides BPHYT_RS04165 and BPHYT_RS04170 are separated by 38 nucleotides
BPHYT_RS04155: BPHYT_RS04155 - polysaccharide deacetylase, at 953,531 to 954,415
_RS04155
BPHYT_RS04160: BPHYT_RS04160 - glycosyl transferase family 1, at 954,930 to 956,150
_RS04160
BPHYT_RS04165: BPHYT_RS04165 - hypothetical protein, at 956,368 to 956,772
_RS04165
BPHYT_RS04170: BPHYT_RS04170 - hypothetical protein, at 956,811 to 957,092
_RS04170
Position (kb) 954
955
956
957 Strain fitness (log2 ratio) -2
-1
0
1 at 954.902 kb on - strand at 954.949 kb on + strand at 955.166 kb on + strand, within BPHYT_RS04160 at 955.167 kb on - strand, within BPHYT_RS04160 at 955.243 kb on - strand, within BPHYT_RS04160 at 955.310 kb on - strand, within BPHYT_RS04160 at 955.407 kb on + strand, within BPHYT_RS04160 at 955.477 kb on - strand, within BPHYT_RS04160 at 955.477 kb on - strand, within BPHYT_RS04160 at 955.477 kb on - strand, within BPHYT_RS04160 at 955.478 kb on + strand, within BPHYT_RS04160 at 956.049 kb on + strand at 956.064 kb on + strand at 956.169 kb on + strand at 956.191 kb on + strand at 956.191 kb on + strand at 956.192 kb on - strand at 956.192 kb on - strand at 956.240 kb on - strand at 956.287 kb on + strand at 956.405 kb on - strand at 956.527 kb on + strand, within BPHYT_RS04165 at 956.527 kb on + strand, within BPHYT_RS04165 at 956.619 kb on + strand, within BPHYT_RS04165 at 956.772 kb on + strand at 956.772 kb on + strand at 956.772 kb on + strand at 956.800 kb on - strand at 956.872 kb on - strand, within BPHYT_RS04170 at 956.968 kb on + strand, within BPHYT_RS04170 at 956.969 kb on - strand, within BPHYT_RS04170 at 957.104 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 954,902 - -0.5 954,949 + +0.8 955,166 + BPHYT_RS04160 0.19 +1.3 955,167 - BPHYT_RS04160 0.19 +0.2 955,243 - BPHYT_RS04160 0.26 +1.2 955,310 - BPHYT_RS04160 0.31 -0.3 955,407 + BPHYT_RS04160 0.39 -0.2 955,477 - BPHYT_RS04160 0.45 +0.5 955,477 - BPHYT_RS04160 0.45 +0.4 955,477 - BPHYT_RS04160 0.45 -2.6 955,478 + BPHYT_RS04160 0.45 -0.2 956,049 + -1.3 956,064 + -0.3 956,169 + +0.3 956,191 + +0.5 956,191 + -0.8 956,192 - +0.0 956,192 - -0.2 956,240 - -0.4 956,287 + -1.0 956,405 - +0.9 956,527 + BPHYT_RS04165 0.39 +1.5 956,527 + BPHYT_RS04165 0.39 +0.1 956,619 + BPHYT_RS04165 0.62 +0.5 956,772 + -0.6 956,772 + -0.6 956,772 + +0.4 956,800 - +0.2 956,872 - BPHYT_RS04170 0.22 -0.9 956,968 + BPHYT_RS04170 0.56 -1.4 956,969 - BPHYT_RS04170 0.56 +1.7 957,104 + +1.7
Or see this region's nucleotide sequence