Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04150

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04145 and BPHYT_RS04150 overlap by 4 nucleotides BPHYT_RS04145: BPHYT_RS04145 - family 2 glycosyl transferase, at 949,986 to 950,957 _RS04145 BPHYT_RS04150: BPHYT_RS04150 - UDP-galactopyranose mutase, at 950,954 to 952,045 _RS04150 Position (kb) 950 951 952 953Strain fitness (log2 ratio) -1 0 1at 950.026 kb on - strandat 950.182 kb on - strand, within BPHYT_RS04145at 950.228 kb on + strand, within BPHYT_RS04145at 950.228 kb on + strand, within BPHYT_RS04145at 950.310 kb on - strand, within BPHYT_RS04145at 950.310 kb on - strand, within BPHYT_RS04145at 950.372 kb on - strand, within BPHYT_RS04145at 950.465 kb on + strand, within BPHYT_RS04145at 950.466 kb on - strand, within BPHYT_RS04145at 950.687 kb on - strand, within BPHYT_RS04145at 950.832 kb on - strand, within BPHYT_RS04145at 950.838 kb on - strand, within BPHYT_RS04145at 951.013 kb on - strandat 951.121 kb on - strand, within BPHYT_RS04150at 951.217 kb on - strand, within BPHYT_RS04150at 951.357 kb on + strand, within BPHYT_RS04150at 951.694 kb on - strand, within BPHYT_RS04150at 951.838 kb on - strand, within BPHYT_RS04150at 951.998 kb on + strandat 951.999 kb on - strandat 952.117 kb on - strandat 952.217 kb on + strandat 952.233 kb on - strandat 952.341 kb on - strandat 952.450 kb on - strandat 952.742 kb on + strandat 952.789 kb on + strandat 952.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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950,026 - +0.3
950,182 - BPHYT_RS04145 0.20 -0.1
950,228 + BPHYT_RS04145 0.25 -0.7
950,228 + BPHYT_RS04145 0.25 +0.7
950,310 - BPHYT_RS04145 0.33 -0.2
950,310 - BPHYT_RS04145 0.33 -0.7
950,372 - BPHYT_RS04145 0.40 +1.4
950,465 + BPHYT_RS04145 0.49 +0.5
950,466 - BPHYT_RS04145 0.49 -0.4
950,687 - BPHYT_RS04145 0.72 +0.9
950,832 - BPHYT_RS04145 0.87 +1.4
950,838 - BPHYT_RS04145 0.88 +1.0
951,013 - +0.6
951,121 - BPHYT_RS04150 0.15 +0.0
951,217 - BPHYT_RS04150 0.24 +0.1
951,357 + BPHYT_RS04150 0.37 +1.4
951,694 - BPHYT_RS04150 0.68 +0.4
951,838 - BPHYT_RS04150 0.81 -0.7
951,998 + -1.1
951,999 - +0.3
952,117 - +0.6
952,217 + -0.7
952,233 - +0.5
952,341 - +0.6
952,450 - -0.1
952,742 + +0.7
952,789 + -0.4
952,830 - +0.5

Or see this region's nucleotide sequence