Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03765 and BPHYT_RS03770 are separated by 134 nucleotides BPHYT_RS03770 and BPHYT_RS03775 are separated by 342 nucleotides BPHYT_RS03775 and BPHYT_RS03780 are separated by 150 nucleotides
BPHYT_RS03765: BPHYT_RS03765 - membrane protein, at 850,720 to 851,106
_RS03765
BPHYT_RS03770: BPHYT_RS03770 - membrane protein, at 851,241 to 851,543
_RS03770
BPHYT_RS03775: BPHYT_RS03775 - peroxidase, at 851,886 to 852,524
_RS03775
BPHYT_RS03780: BPHYT_RS03780 - acyl-CoA dehydrogenase, at 852,675 to 853,865
_RS03780
Position (kb) 851
852
853 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 851.070 kb on + strand at 851.659 kb on + strand at 851.660 kb on - strand at 851.707 kb on + strand at 851.707 kb on + strand at 851.708 kb on - strand at 851.708 kb on - strand at 851.743 kb on - strand at 851.770 kb on - strand at 851.770 kb on - strand at 851.774 kb on + strand at 851.774 kb on + strand at 851.775 kb on - strand at 851.798 kb on + strand at 851.799 kb on - strand at 851.799 kb on - strand at 851.799 kb on - strand at 851.822 kb on - strand at 851.873 kb on + strand at 851.873 kb on + strand at 851.874 kb on - strand at 851.893 kb on + strand at 851.894 kb on - strand at 851.972 kb on + strand, within BPHYT_RS03775 at 851.972 kb on + strand, within BPHYT_RS03775 at 851.972 kb on + strand, within BPHYT_RS03775 at 851.973 kb on - strand, within BPHYT_RS03775 at 851.973 kb on - strand, within BPHYT_RS03775 at 851.973 kb on - strand, within BPHYT_RS03775 at 852.138 kb on - strand, within BPHYT_RS03775 at 852.301 kb on - strand, within BPHYT_RS03775 at 852.475 kb on - strand at 852.477 kb on - strand at 852.477 kb on - strand at 852.523 kb on - strand at 852.532 kb on + strand at 852.737 kb on + strand at 852.745 kb on + strand at 852.746 kb on - strand at 852.746 kb on - strand at 852.746 kb on - strand at 853.039 kb on + strand, within BPHYT_RS03780 at 853.099 kb on + strand, within BPHYT_RS03780 at 853.100 kb on - strand, within BPHYT_RS03780 at 853.382 kb on - strand, within BPHYT_RS03780 at 853.495 kb on + strand, within BPHYT_RS03780 at 853.495 kb on + strand, within BPHYT_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 851,070 + -3.1 851,659 + +0.4 851,660 - +0.1 851,707 + +2.2 851,707 + +0.9 851,708 - +1.2 851,708 - +0.2 851,743 - -1.1 851,770 - +0.2 851,770 - +0.5 851,774 + +0.9 851,774 + +2.5 851,775 - +0.0 851,798 + -0.5 851,799 - +1.3 851,799 - -0.8 851,799 - +0.4 851,822 - +1.4 851,873 + +0.9 851,873 + +0.1 851,874 - +1.0 851,893 + -0.7 851,894 - +1.6 851,972 + BPHYT_RS03775 0.13 +0.3 851,972 + BPHYT_RS03775 0.13 -0.7 851,972 + BPHYT_RS03775 0.13 -2.1 851,973 - BPHYT_RS03775 0.14 +0.0 851,973 - BPHYT_RS03775 0.14 -1.3 851,973 - BPHYT_RS03775 0.14 -2.2 852,138 - BPHYT_RS03775 0.39 -0.8 852,301 - BPHYT_RS03775 0.65 +11.4 852,475 - -1.6 852,477 - -0.2 852,477 - +0.0 852,523 - +0.5 852,532 + -1.1 852,737 + -2.7 852,745 + -2.9 852,746 - +0.3 852,746 - -2.4 852,746 - +0.9 853,039 + BPHYT_RS03780 0.31 -1.6 853,099 + BPHYT_RS03780 0.36 -2.2 853,100 - BPHYT_RS03780 0.36 -1.4 853,382 - BPHYT_RS03780 0.59 -0.3 853,495 + BPHYT_RS03780 0.69 -2.6 853,495 + BPHYT_RS03780 0.69 -0.2
Or see this region's nucleotide sequence