Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03650

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03645 and BPHYT_RS03650 are separated by 45 nucleotidesBPHYT_RS03650 and BPHYT_RS03655 are separated by 206 nucleotides BPHYT_RS03645: BPHYT_RS03645 - tRNA dimethylallyltransferase, at 828,042 to 828,989 _RS03645 BPHYT_RS03650: BPHYT_RS03650 - DNA mismatch repair protein, at 829,035 to 831,098 _RS03650 BPHYT_RS03655: BPHYT_RS03655 - membrane protein, at 831,305 to 831,976 _RS03655 Position (kb) 829 830 831 832Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 828.196 kb on + strand, within BPHYT_RS03645at 828.271 kb on - strand, within BPHYT_RS03645at 828.474 kb on - strand, within BPHYT_RS03645at 828.667 kb on + strand, within BPHYT_RS03645at 828.978 kb on - strandat 829.084 kb on + strandat 829.085 kb on - strandat 829.258 kb on + strand, within BPHYT_RS03650at 829.259 kb on - strand, within BPHYT_RS03650at 829.508 kb on - strand, within BPHYT_RS03650at 829.508 kb on - strand, within BPHYT_RS03650at 829.576 kb on + strand, within BPHYT_RS03650at 829.577 kb on - strand, within BPHYT_RS03650at 829.577 kb on - strand, within BPHYT_RS03650at 829.667 kb on - strand, within BPHYT_RS03650at 830.183 kb on - strand, within BPHYT_RS03650at 830.183 kb on - strand, within BPHYT_RS03650at 830.240 kb on + strand, within BPHYT_RS03650at 830.748 kb on - strand, within BPHYT_RS03650at 831.019 kb on - strandat 831.109 kb on + strandat 831.110 kb on - strandat 831.152 kb on + strandat 831.192 kb on + strandat 831.193 kb on - strandat 831.293 kb on - strandat 831.318 kb on + strandat 831.567 kb on - strand, within BPHYT_RS03655at 831.833 kb on + strand, within BPHYT_RS03655at 831.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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828,196 + BPHYT_RS03645 0.16 -0.7
828,271 - BPHYT_RS03645 0.24 +0.9
828,474 - BPHYT_RS03645 0.46 -0.1
828,667 + BPHYT_RS03645 0.66 +2.5
828,978 - -0.0
829,084 + +2.0
829,085 - +3.5
829,258 + BPHYT_RS03650 0.11 -1.6
829,259 - BPHYT_RS03650 0.11 +2.5
829,508 - BPHYT_RS03650 0.23 +4.9
829,508 - BPHYT_RS03650 0.23 -0.5
829,576 + BPHYT_RS03650 0.26 +1.7
829,577 - BPHYT_RS03650 0.26 +0.3
829,577 - BPHYT_RS03650 0.26 +4.2
829,667 - BPHYT_RS03650 0.31 -0.7
830,183 - BPHYT_RS03650 0.56 +3.6
830,183 - BPHYT_RS03650 0.56 +0.2
830,240 + BPHYT_RS03650 0.58 -0.1
830,748 - BPHYT_RS03650 0.83 +0.3
831,019 - +1.9
831,109 + +0.0
831,110 - +0.6
831,152 + -1.6
831,192 + +0.3
831,193 - +0.6
831,293 - -0.6
831,318 + -0.1
831,567 - BPHYT_RS03655 0.39 -2.6
831,833 + BPHYT_RS03655 0.79 +1.4
831,983 - +0.9

Or see this region's nucleotide sequence