Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03570 and BPHYT_RS03575 are separated by 185 nucleotides BPHYT_RS03575 and BPHYT_RS03580 are separated by 8 nucleotides BPHYT_RS03580 and BPHYT_RS03585 are separated by 523 nucleotides
BPHYT_RS03570: BPHYT_RS03570 - heat-inducible transcription repressor HrcA, at 810,557 to 811,576
_RS03570
BPHYT_RS03575: BPHYT_RS03575 - ferrochelatase, at 811,762 to 812,832
_RS03575
BPHYT_RS03580: BPHYT_RS03580 - RNA-binding protein S4, at 812,841 to 813,248
_RS03580
BPHYT_RS03585: BPHYT_RS03585 - protein GrpE, at 813,772 to 814,356
_RS03585
Position (kb) 811
812
813 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 810.844 kb on + strand, within BPHYT_RS03570 at 810.844 kb on + strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 811.003 kb on + strand, within BPHYT_RS03570 at 811.004 kb on - strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.092 kb on - strand, within BPHYT_RS03570 at 811.414 kb on - strand, within BPHYT_RS03570 at 811.509 kb on - strand at 811.708 kb on + strand at 811.709 kb on - strand at 811.710 kb on + strand at 811.710 kb on + strand at 812.818 kb on - strand at 813.165 kb on + strand, within BPHYT_RS03580 at 813.165 kb on + strand, within BPHYT_RS03580 at 813.166 kb on - strand, within BPHYT_RS03580 at 813.166 kb on - strand, within BPHYT_RS03580 at 813.384 kb on + strand at 813.409 kb on - strand at 813.439 kb on + strand at 813.439 kb on + strand at 813.440 kb on - strand at 813.442 kb on - strand at 813.442 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.502 kb on + strand at 813.502 kb on + strand at 813.502 kb on + strand at 813.503 kb on - strand at 813.503 kb on - strand at 813.503 kb on - strand at 813.550 kb on - strand at 813.558 kb on + strand at 813.559 kb on - strand at 813.751 kb on + strand at 813.751 kb on + strand at 813.755 kb on + strand at 813.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 810,844 + BPHYT_RS03570 0.28 -2.7 810,844 + BPHYT_RS03570 0.28 -0.2 810,845 - BPHYT_RS03570 0.28 -3.3 810,845 - BPHYT_RS03570 0.28 -1.1 810,845 - BPHYT_RS03570 0.28 +0.9 811,003 + BPHYT_RS03570 0.44 -2.3 811,004 - BPHYT_RS03570 0.44 -4.2 811,091 + BPHYT_RS03570 0.52 -0.7 811,091 + BPHYT_RS03570 0.52 -3.4 811,091 + BPHYT_RS03570 0.52 -0.7 811,092 - BPHYT_RS03570 0.52 -0.1 811,414 - BPHYT_RS03570 0.84 -0.1 811,509 - -0.7 811,708 + -0.4 811,709 - -0.6 811,710 + +0.5 811,710 + -2.0 812,818 - +1.7 813,165 + BPHYT_RS03580 0.79 -1.4 813,165 + BPHYT_RS03580 0.79 -0.8 813,166 - BPHYT_RS03580 0.80 +0.2 813,166 - BPHYT_RS03580 0.80 +2.3 813,384 + +0.1 813,409 - +1.9 813,439 + -0.3 813,439 + -2.7 813,440 - +1.5 813,442 - -1.3 813,442 - -1.8 813,492 - +0.5 813,492 - -1.8 813,492 - -0.8 813,492 - -1.9 813,492 - +0.4 813,492 - -1.1 813,492 - +0.3 813,502 + -1.0 813,502 + -0.5 813,502 + +0.0 813,503 - +0.7 813,503 - +0.7 813,503 - +0.2 813,550 - +0.5 813,558 + -1.4 813,559 - +1.8 813,751 + +1.0 813,751 + +0.1 813,755 + -0.3 813,755 + +0.1
Or see this region's nucleotide sequence