Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03385 and BPHYT_RS03390 are separated by 70 nucleotides BPHYT_RS03390 and BPHYT_RS03395 are separated by 218 nucleotides BPHYT_RS03395 and BPHYT_RS03400 are separated by 783 nucleotides
BPHYT_RS03385: BPHYT_RS03385 - DeoR family transcriptional regulator, at 761,732 to 762,472
_RS03385
BPHYT_RS03390: BPHYT_RS03390 - glyoxalase, at 762,543 to 762,926
_RS03390
BPHYT_RS03395: BPHYT_RS03395 - DNA methyltransferase, at 763,145 to 764,446
_RS03395
BPHYT_RS03400: BPHYT_RS03400 - ATP-dependent DNA helicase RecG, at 765,230 to 767,680
_RS03400
Position (kb) 763
764
765 Strain fitness (log2 ratio) -2
-1
0
1
2 at 762.306 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.432 kb on + strand at 762.433 kb on - strand at 762.462 kb on + strand at 762.463 kb on - strand at 762.607 kb on + strand, within BPHYT_RS03390 at 762.785 kb on - strand, within BPHYT_RS03390 at 762.854 kb on - strand, within BPHYT_RS03390 at 762.999 kb on - strand at 763.333 kb on + strand, within BPHYT_RS03395 at 763.334 kb on - strand, within BPHYT_RS03395 at 763.494 kb on + strand, within BPHYT_RS03395 at 763.669 kb on + strand, within BPHYT_RS03395 at 763.731 kb on + strand, within BPHYT_RS03395 at 763.840 kb on - strand, within BPHYT_RS03395 at 764.202 kb on + strand, within BPHYT_RS03395 at 764.202 kb on + strand, within BPHYT_RS03395 at 764.203 kb on - strand, within BPHYT_RS03395 at 764.203 kb on - strand, within BPHYT_RS03395 at 764.271 kb on + strand, within BPHYT_RS03395 at 764.778 kb on + strand at 764.864 kb on - strand at 764.922 kb on - strand at 764.974 kb on - strand at 764.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 762,306 + BPHYT_RS03385 0.77 -0.3 762,325 + BPHYT_RS03385 0.80 +0.6 762,325 + BPHYT_RS03385 0.80 +0.4 762,432 + +0.6 762,433 - -0.9 762,462 + -0.1 762,463 - -0.4 762,607 + BPHYT_RS03390 0.17 +0.2 762,785 - BPHYT_RS03390 0.63 +0.8 762,854 - BPHYT_RS03390 0.81 +1.3 762,999 - +0.3 763,333 + BPHYT_RS03395 0.14 +1.9 763,334 - BPHYT_RS03395 0.15 +2.5 763,494 + BPHYT_RS03395 0.27 -0.2 763,669 + BPHYT_RS03395 0.40 +0.4 763,731 + BPHYT_RS03395 0.45 -0.2 763,840 - BPHYT_RS03395 0.53 -0.9 764,202 + BPHYT_RS03395 0.81 -0.8 764,202 + BPHYT_RS03395 0.81 -0.0 764,203 - BPHYT_RS03395 0.81 +0.1 764,203 - BPHYT_RS03395 0.81 -0.4 764,271 + BPHYT_RS03395 0.86 -2.0 764,778 + -0.2 764,864 - -0.1 764,922 - +0.1 764,974 - -0.3 764,974 - -0.6
Or see this region's nucleotide sequence