Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03380 and BPHYT_RS03385 are separated by 114 nucleotides BPHYT_RS03385 and BPHYT_RS03390 are separated by 70 nucleotides BPHYT_RS03390 and BPHYT_RS03395 are separated by 218 nucleotides
BPHYT_RS03380: BPHYT_RS03380 - NAD(P) transhydrogenase subunit beta, at 760,163 to 761,617
_RS03380
BPHYT_RS03385: BPHYT_RS03385 - DeoR family transcriptional regulator, at 761,732 to 762,472
_RS03385
BPHYT_RS03390: BPHYT_RS03390 - glyoxalase, at 762,543 to 762,926
_RS03390
BPHYT_RS03395: BPHYT_RS03395 - DNA methyltransferase, at 763,145 to 764,446
_RS03395
Position (kb) 761
762
763 Strain fitness (log2 ratio) -1
0
1
2
3 at 760.890 kb on - strand, within BPHYT_RS03380 at 760.989 kb on - strand, within BPHYT_RS03380 at 761.168 kb on + strand, within BPHYT_RS03380 at 761.249 kb on + strand, within BPHYT_RS03380 at 761.250 kb on - strand, within BPHYT_RS03380 at 761.250 kb on - strand, within BPHYT_RS03380 at 761.321 kb on + strand at 761.347 kb on + strand, within BPHYT_RS03380 at 761.468 kb on + strand, within BPHYT_RS03380 at 761.469 kb on - strand, within BPHYT_RS03380 at 761.543 kb on + strand at 761.544 kb on - strand at 761.596 kb on + strand at 761.597 kb on - strand at 761.616 kb on - strand at 761.722 kb on + strand at 761.734 kb on - strand at 762.306 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.432 kb on + strand at 762.433 kb on - strand at 762.462 kb on + strand at 762.463 kb on - strand at 762.607 kb on + strand, within BPHYT_RS03390 at 762.785 kb on - strand, within BPHYT_RS03390 at 762.854 kb on - strand, within BPHYT_RS03390 at 762.999 kb on - strand at 763.333 kb on + strand, within BPHYT_RS03395 at 763.334 kb on - strand, within BPHYT_RS03395
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 760,890 - BPHYT_RS03380 0.50 +0.3 760,989 - BPHYT_RS03380 0.57 +0.6 761,168 + BPHYT_RS03380 0.69 +1.5 761,249 + BPHYT_RS03380 0.75 +0.9 761,250 - BPHYT_RS03380 0.75 +1.8 761,250 - BPHYT_RS03380 0.75 +3.2 761,321 + -0.7 761,347 + BPHYT_RS03380 0.81 +0.5 761,468 + BPHYT_RS03380 0.90 -1.1 761,469 - BPHYT_RS03380 0.90 -1.6 761,543 + +2.0 761,544 - +1.0 761,596 + +0.7 761,597 - +2.2 761,616 - +0.9 761,722 + +0.4 761,734 - -0.6 762,306 + BPHYT_RS03385 0.77 -0.3 762,325 + BPHYT_RS03385 0.80 +0.6 762,325 + BPHYT_RS03385 0.80 +0.4 762,432 + +0.6 762,433 - -0.9 762,462 + -0.1 762,463 - -0.4 762,607 + BPHYT_RS03390 0.17 +0.2 762,785 - BPHYT_RS03390 0.63 +0.8 762,854 - BPHYT_RS03390 0.81 +1.3 762,999 - +0.3 763,333 + BPHYT_RS03395 0.14 +1.9 763,334 - BPHYT_RS03395 0.15 +2.5
Or see this region's nucleotide sequence