Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03035 and BPHYT_RS03040 overlap by 14 nucleotides BPHYT_RS03040 and BPHYT_RS03045 are separated by 200 nucleotides BPHYT_RS03045 and BPHYT_RS03050 overlap by 4 nucleotides
BPHYT_RS03035: BPHYT_RS03035 - cytochrome C oxidase subunit I, at 676,241 to 677,866
_RS03035
BPHYT_RS03040: BPHYT_RS03040 - cytochrome C oxidase subunit II, at 677,853 to 678,425
_RS03040
BPHYT_RS03045: BPHYT_RS03045 - alcohol dehydrogenase, at 678,626 to 680,011
_RS03045
BPHYT_RS03050: BPHYT_RS03050 - cytochrome C, at 680,008 to 680,721
_RS03050
Position (kb) 678
679
680
681 Strain fitness (log2 ratio) -1
0
1
2 at 677.692 kb on - strand, within BPHYT_RS03035 at 677.692 kb on - strand, within BPHYT_RS03035 at 677.692 kb on - strand, within BPHYT_RS03035 at 678.465 kb on + strand at 678.466 kb on - strand at 678.604 kb on - strand at 678.604 kb on - strand at 678.708 kb on + strand at 678.708 kb on + strand at 678.708 kb on + strand at 678.709 kb on - strand at 678.709 kb on - strand at 678.709 kb on - strand at 678.709 kb on - strand at 678.709 kb on - strand at 678.709 kb on - strand at 678.768 kb on + strand, within BPHYT_RS03045 at 678.967 kb on + strand, within BPHYT_RS03045 at 678.967 kb on + strand, within BPHYT_RS03045 at 678.968 kb on - strand, within BPHYT_RS03045 at 678.968 kb on - strand, within BPHYT_RS03045 at 678.968 kb on - strand, within BPHYT_RS03045 at 678.971 kb on - strand, within BPHYT_RS03045 at 679.062 kb on + strand, within BPHYT_RS03045 at 679.062 kb on + strand, within BPHYT_RS03045 at 679.062 kb on + strand, within BPHYT_RS03045 at 679.063 kb on - strand, within BPHYT_RS03045 at 679.077 kb on + strand, within BPHYT_RS03045 at 679.077 kb on + strand, within BPHYT_RS03045 at 679.078 kb on - strand, within BPHYT_RS03045 at 679.101 kb on + strand, within BPHYT_RS03045 at 679.270 kb on + strand, within BPHYT_RS03045 at 679.271 kb on - strand, within BPHYT_RS03045 at 679.320 kb on + strand, within BPHYT_RS03045 at 679.384 kb on - strand, within BPHYT_RS03045 at 679.401 kb on + strand, within BPHYT_RS03045 at 679.402 kb on - strand, within BPHYT_RS03045 at 679.524 kb on + strand, within BPHYT_RS03045 at 679.524 kb on + strand, within BPHYT_RS03045 at 679.524 kb on + strand, within BPHYT_RS03045 at 679.525 kb on - strand, within BPHYT_RS03045 at 679.525 kb on - strand, within BPHYT_RS03045 at 679.656 kb on + strand, within BPHYT_RS03045 at 679.810 kb on + strand, within BPHYT_RS03045 at 679.810 kb on + strand, within BPHYT_RS03045 at 679.811 kb on - strand, within BPHYT_RS03045 at 680.216 kb on + strand, within BPHYT_RS03050 at 680.216 kb on + strand, within BPHYT_RS03050 at 680.432 kb on + strand, within BPHYT_RS03050 at 680.459 kb on + strand, within BPHYT_RS03050 at 680.460 kb on - strand, within BPHYT_RS03050 at 680.475 kb on - strand, within BPHYT_RS03050 at 680.519 kb on + strand, within BPHYT_RS03050 at 680.519 kb on + strand, within BPHYT_RS03050 at 680.552 kb on + strand, within BPHYT_RS03050 at 680.552 kb on + strand, within BPHYT_RS03050 at 680.553 kb on - strand, within BPHYT_RS03050 at 680.671 kb on + strand at 680.671 kb on + strand at 680.678 kb on + strand at 680.679 kb on - strand at 680.706 kb on + strand at 680.706 kb on + strand at 680.747 kb on + strand at 680.748 kb on - strand at 680.760 kb on - strand at 680.810 kb on + strand at 680.810 kb on + strand at 680.810 kb on + strand at 680.839 kb on + strand at 680.841 kb on + strand at 680.842 kb on - strand at 680.921 kb on + strand at 680.921 kb on + strand at 680.922 kb on - strand at 680.923 kb on + strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 677,692 - BPHYT_RS03035 0.89 -0.6 677,692 - BPHYT_RS03035 0.89 +1.6 677,692 - BPHYT_RS03035 0.89 +0.3 678,465 + +1.4 678,466 - +1.8 678,604 - -0.3 678,604 - +0.1 678,708 + +0.1 678,708 + +0.2 678,708 + +0.4 678,709 - +0.9 678,709 - +0.9 678,709 - +0.9 678,709 - +2.5 678,709 - -0.6 678,709 - +1.2 678,768 + BPHYT_RS03045 0.10 +0.0 678,967 + BPHYT_RS03045 0.25 -0.4 678,967 + BPHYT_RS03045 0.25 +1.1 678,968 - BPHYT_RS03045 0.25 +0.8 678,968 - BPHYT_RS03045 0.25 +0.7 678,968 - BPHYT_RS03045 0.25 +1.3 678,971 - BPHYT_RS03045 0.25 +2.4 679,062 + BPHYT_RS03045 0.31 +0.8 679,062 + BPHYT_RS03045 0.31 -0.3 679,062 + BPHYT_RS03045 0.31 +1.2 679,063 - BPHYT_RS03045 0.32 +0.8 679,077 + BPHYT_RS03045 0.33 -1.1 679,077 + BPHYT_RS03045 0.33 -0.5 679,078 - BPHYT_RS03045 0.33 +0.2 679,101 + BPHYT_RS03045 0.34 -0.5 679,270 + BPHYT_RS03045 0.46 +1.4 679,271 - BPHYT_RS03045 0.47 +1.2 679,320 + BPHYT_RS03045 0.50 +0.2 679,384 - BPHYT_RS03045 0.55 +1.5 679,401 + BPHYT_RS03045 0.56 -0.1 679,402 - BPHYT_RS03045 0.56 -1.1 679,524 + BPHYT_RS03045 0.65 +2.7 679,524 + BPHYT_RS03045 0.65 +0.5 679,524 + BPHYT_RS03045 0.65 -0.2 679,525 - BPHYT_RS03045 0.65 +1.2 679,525 - BPHYT_RS03045 0.65 +0.0 679,656 + BPHYT_RS03045 0.74 +1.3 679,810 + BPHYT_RS03045 0.85 +1.5 679,810 + BPHYT_RS03045 0.85 -0.6 679,811 - BPHYT_RS03045 0.85 -0.5 680,216 + BPHYT_RS03050 0.29 +2.2 680,216 + BPHYT_RS03050 0.29 +0.9 680,432 + BPHYT_RS03050 0.59 -0.1 680,459 + BPHYT_RS03050 0.63 -0.4 680,460 - BPHYT_RS03050 0.63 +0.9 680,475 - BPHYT_RS03050 0.65 -0.6 680,519 + BPHYT_RS03050 0.72 -0.9 680,519 + BPHYT_RS03050 0.72 +0.8 680,552 + BPHYT_RS03050 0.76 +0.3 680,552 + BPHYT_RS03050 0.76 -1.1 680,553 - BPHYT_RS03050 0.76 +0.8 680,671 + -0.1 680,671 + +0.6 680,678 + +1.0 680,679 - +0.0 680,706 + +1.1 680,706 + +0.8 680,747 + -1.1 680,748 - +2.5 680,760 - -0.6 680,810 + +0.2 680,810 + +1.5 680,810 + -0.8 680,839 + +0.0 680,841 + -1.5 680,842 - +0.4 680,921 + +0.3 680,921 + +0.5 680,922 - +0.9 680,923 + +1.8 681,007 + -1.4 681,007 + +0.7 681,008 - +0.5
Or see this region's nucleotide sequence