Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02965

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02960 and BPHYT_RS02965 are separated by 184 nucleotidesBPHYT_RS02965 and BPHYT_RS02970 are separated by 37 nucleotides BPHYT_RS02960: BPHYT_RS02960 - peptidase, at 657,164 to 658,390 _RS02960 BPHYT_RS02965: BPHYT_RS02965 - membrane protein, at 658,575 to 659,660 _RS02965 BPHYT_RS02970: BPHYT_RS02970 - excinuclease ABC subunit A, at 659,698 to 662,571 _RS02970 Position (kb) 658 659 660Strain fitness (log2 ratio) -2 -1 0 1 2 3at 657.799 kb on + strand, within BPHYT_RS02960at 657.799 kb on + strand, within BPHYT_RS02960at 657.799 kb on + strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.801 kb on + strand, within BPHYT_RS02960at 657.978 kb on + strand, within BPHYT_RS02960at 658.142 kb on - strand, within BPHYT_RS02960at 658.142 kb on - strand, within BPHYT_RS02960at 658.170 kb on + strand, within BPHYT_RS02960at 658.171 kb on - strand, within BPHYT_RS02960at 658.171 kb on - strand, within BPHYT_RS02960at 658.610 kb on + strandat 658.613 kb on - strandat 659.066 kb on + strand, within BPHYT_RS02965at 659.066 kb on + strand, within BPHYT_RS02965at 659.067 kb on - strand, within BPHYT_RS02965at 659.540 kb on + strand, within BPHYT_RS02965at 659.543 kb on - strand, within BPHYT_RS02965at 659.614 kb on - strandat 659.666 kb on - strandat 659.666 kb on - strandat 659.696 kb on - strandat 659.700 kb on - strandat 659.892 kb on + strandat 659.895 kb on + strandat 659.895 kb on + strandat 659.896 kb on - strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.978 kb on - strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.982 kb on - strandat 659.982 kb on - strandat 659.982 kb on - strandat 659.983 kb on + strandat 659.983 kb on + strandat 660.022 kb on + strand, within BPHYT_RS02970at 660.022 kb on + strand, within BPHYT_RS02970at 660.022 kb on + strand, within BPHYT_RS02970at 660.022 kb on + strand, within BPHYT_RS02970at 660.084 kb on - strand, within BPHYT_RS02970at 660.152 kb on + strand, within BPHYT_RS02970at 660.152 kb on + strand, within BPHYT_RS02970at 660.203 kb on + strand, within BPHYT_RS02970at 660.204 kb on - strand, within BPHYT_RS02970at 660.230 kb on + strand, within BPHYT_RS02970at 660.263 kb on + strand, within BPHYT_RS02970at 660.263 kb on + strand, within BPHYT_RS02970at 660.263 kb on + strandat 660.264 kb on - strand, within BPHYT_RS02970at 660.337 kb on + strand, within BPHYT_RS02970at 660.338 kb on - strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.432 kb on - strand, within BPHYT_RS02970at 660.575 kb on + strand, within BPHYT_RS02970

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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657,799 + BPHYT_RS02960 0.52 -0.1
657,799 + BPHYT_RS02960 0.52 +0.3
657,799 + BPHYT_RS02960 0.52 +0.8
657,800 - BPHYT_RS02960 0.52 -0.5
657,800 - BPHYT_RS02960 0.52 -0.3
657,800 - BPHYT_RS02960 0.52 -0.1
657,800 - BPHYT_RS02960 0.52 +1.5
657,801 + BPHYT_RS02960 0.52 -0.1
657,978 + BPHYT_RS02960 0.66 +0.9
658,142 - BPHYT_RS02960 0.80 +1.5
658,142 - BPHYT_RS02960 0.80 -0.7
658,170 + BPHYT_RS02960 0.82 +0.1
658,171 - BPHYT_RS02960 0.82 +0.7
658,171 - BPHYT_RS02960 0.82 +0.1
658,610 + +1.8
658,613 - +1.2
659,066 + BPHYT_RS02965 0.45 +1.3
659,066 + BPHYT_RS02965 0.45 -1.1
659,067 - BPHYT_RS02965 0.45 +2.9
659,540 + BPHYT_RS02965 0.89 +0.9
659,543 - BPHYT_RS02965 0.89 +3.3
659,614 - +1.4
659,666 - +0.6
659,666 - -0.8
659,696 - +1.5
659,700 - -0.5
659,892 + -1.1
659,895 + +1.5
659,895 + +1.5
659,896 - -2.2
659,977 + +2.4
659,977 + +1.3
659,977 + +1.2
659,977 + -0.4
659,977 + +0.3
659,977 + +0.9
659,977 + +1.1
659,978 - -2.4
659,981 + +1.8
659,981 + +0.7
659,981 + +1.9
659,981 + +0.5
659,981 + -0.8
659,981 + -1.0
659,981 + -0.5
659,982 - +0.9
659,982 - -0.6
659,982 - -0.6
659,983 + +0.9
659,983 + +1.9
660,022 + BPHYT_RS02970 0.11 +0.2
660,022 + BPHYT_RS02970 0.11 +3.3
660,022 + BPHYT_RS02970 0.11 -0.4
660,022 + BPHYT_RS02970 0.11 +0.8
660,084 - BPHYT_RS02970 0.13 +1.9
660,152 + BPHYT_RS02970 0.16 +1.8
660,152 + BPHYT_RS02970 0.16 +0.8
660,203 + BPHYT_RS02970 0.18 +0.5
660,204 - BPHYT_RS02970 0.18 -2.6
660,230 + BPHYT_RS02970 0.19 +1.4
660,263 + BPHYT_RS02970 0.20 +0.3
660,263 + BPHYT_RS02970 0.20 -0.4
660,263 + -0.1
660,264 - BPHYT_RS02970 0.20 +0.5
660,337 + BPHYT_RS02970 0.22 -0.5
660,338 - BPHYT_RS02970 0.22 -0.2
660,431 + BPHYT_RS02970 0.26 +1.4
660,431 + BPHYT_RS02970 0.26 -1.2
660,431 + BPHYT_RS02970 0.26 +0.3
660,431 + BPHYT_RS02970 0.26 -0.6
660,432 - BPHYT_RS02970 0.26 +1.5
660,575 + BPHYT_RS02970 0.31 +0.6

Or see this region's nucleotide sequence