Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02875 and BPHYT_RS02880 are separated by 29 nucleotides BPHYT_RS02880 and BPHYT_RS02885 are separated by 39 nucleotides BPHYT_RS02885 and BPHYT_RS02890 are separated by 97 nucleotides
BPHYT_RS02875: BPHYT_RS02875 - adenine glycosylase, at 641,219 to 642,280
_RS02875
BPHYT_RS02880: BPHYT_RS02880 - ATP-dependent protease, at 642,310 to 642,945
_RS02880
BPHYT_RS02885: BPHYT_RS02885 - glmZ(sRNA)-inactivating NTPase, at 642,985 to 643,878
_RS02885
BPHYT_RS02890: BPHYT_RS02890 - HPr kinase/phosphorylase, at 643,976 to 644,944
_RS02890
Position (kb) 642
643
644 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 642.335 kb on + strand at 642.336 kb on - strand at 642.766 kb on + strand, within BPHYT_RS02880 at 642.767 kb on - strand, within BPHYT_RS02880 at 642.894 kb on + strand at 642.894 kb on + strand at 642.895 kb on - strand at 642.930 kb on + strand at 642.930 kb on + strand at 642.937 kb on - strand at 642.937 kb on - strand at 642.994 kb on + strand at 642.994 kb on + strand at 642.995 kb on - strand at 643.135 kb on + strand, within BPHYT_RS02885 at 643.136 kb on - strand, within BPHYT_RS02885 at 643.139 kb on + strand, within BPHYT_RS02885 at 643.139 kb on + strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.286 kb on + strand, within BPHYT_RS02885 at 643.286 kb on + strand, within BPHYT_RS02885 at 643.287 kb on - strand, within BPHYT_RS02885 at 643.444 kb on - strand, within BPHYT_RS02885 at 643.639 kb on + strand, within BPHYT_RS02885 at 643.640 kb on - strand, within BPHYT_RS02885 at 643.640 kb on - strand, within BPHYT_RS02885 at 643.640 kb on - strand, within BPHYT_RS02885 at 643.799 kb on + strand at 643.799 kb on + strand at 643.800 kb on - strand at 643.802 kb on + strand at 643.802 kb on + strand at 643.853 kb on - strand at 643.854 kb on + strand at 643.854 kb on + strand at 643.855 kb on - strand at 643.870 kb on + strand at 643.870 kb on + strand at 643.907 kb on + strand at 643.907 kb on + strand at 643.907 kb on + strand at 643.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 642,335 + +0.0 642,336 - -0.4 642,766 + BPHYT_RS02880 0.72 -0.8 642,767 - BPHYT_RS02880 0.72 +1.4 642,894 + +0.7 642,894 + +0.2 642,895 - +0.0 642,930 + -2.5 642,930 + +1.6 642,937 - -1.7 642,937 - +0.3 642,994 + -3.4 642,994 + +0.1 642,995 - +1.0 643,135 + BPHYT_RS02885 0.17 -2.7 643,136 - BPHYT_RS02885 0.17 -3.5 643,139 + BPHYT_RS02885 0.17 -1.0 643,139 + BPHYT_RS02885 0.17 -6.1 643,140 - BPHYT_RS02885 0.17 -2.2 643,140 - BPHYT_RS02885 0.17 -2.5 643,140 - BPHYT_RS02885 0.17 -5.4 643,140 - BPHYT_RS02885 0.17 -2.0 643,286 + BPHYT_RS02885 0.34 -1.0 643,286 + BPHYT_RS02885 0.34 +1.0 643,287 - BPHYT_RS02885 0.34 -0.6 643,444 - BPHYT_RS02885 0.51 -3.8 643,639 + BPHYT_RS02885 0.73 -4.0 643,640 - BPHYT_RS02885 0.73 -2.7 643,640 - BPHYT_RS02885 0.73 -0.6 643,640 - BPHYT_RS02885 0.73 -1.0 643,799 + -4.0 643,799 + -4.3 643,800 - -0.6 643,802 + -2.2 643,802 + -1.4 643,853 - -3.3 643,854 + -2.9 643,854 + -1.0 643,855 - -3.6 643,870 + -2.0 643,870 + -3.4 643,907 + -2.1 643,907 + +1.5 643,907 + +2.1 643,908 - +1.7
Or see this region's nucleotide sequence