Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02790 and BPHYT_RS02795 are separated by 508 nucleotides BPHYT_RS02795 and BPHYT_RS02800 are separated by 228 nucleotides BPHYT_RS02800 and BPHYT_RS02805 are separated by 25 nucleotides
BPHYT_RS02790: BPHYT_RS02790 - hypothetical protein, at 625,720 to 626,763
_RS02790
BPHYT_RS02795: BPHYT_RS02795 - glycosyl transferase, at 627,272 to 628,243
_RS02795
BPHYT_RS02800: BPHYT_RS02800 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 628,472 to 629,170
_RS02800
BPHYT_RS02805: BPHYT_RS02805 - maleylacetoacetate isomerase, at 629,196 to 629,840
_RS02805
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 626.381 kb on + strand, within BPHYT_RS02790 at 626.381 kb on + strand, within BPHYT_RS02790 at 626.382 kb on - strand, within BPHYT_RS02790 at 626.988 kb on - strand at 627.005 kb on - strand at 627.005 kb on - strand at 627.106 kb on - strand at 627.110 kb on + strand at 627.111 kb on - strand at 627.117 kb on - strand at 627.117 kb on - strand at 627.184 kb on + strand at 627.184 kb on + strand at 627.184 kb on + strand at 627.184 kb on + strand at 627.185 kb on - strand at 627.185 kb on - strand at 627.185 kb on - strand at 627.189 kb on + strand at 627.190 kb on - strand at 627.190 kb on - strand at 627.190 kb on - strand at 627.499 kb on + strand, within BPHYT_RS02795 at 627.611 kb on - strand, within BPHYT_RS02795 at 627.611 kb on - strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.952 kb on - strand, within BPHYT_RS02795 at 627.952 kb on - strand, within BPHYT_RS02795 at 628.129 kb on - strand, within BPHYT_RS02795 at 628.129 kb on - strand, within BPHYT_RS02795 at 628.294 kb on + strand at 628.295 kb on - strand at 628.321 kb on + strand at 628.322 kb on - strand at 628.330 kb on + strand at 628.330 kb on + strand at 628.331 kb on - strand at 628.416 kb on + strand at 628.459 kb on - strand at 628.459 kb on - strand at 628.479 kb on - strand at 628.479 kb on - strand at 628.479 kb on - strand at 628.482 kb on + strand at 628.482 kb on + strand at 628.483 kb on - strand at 628.483 kb on - strand at 628.483 kb on - strand at 628.553 kb on + strand, within BPHYT_RS02800 at 628.553 kb on + strand, within BPHYT_RS02800 at 628.554 kb on - strand, within BPHYT_RS02800 at 628.571 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.791 kb on - strand, within BPHYT_RS02800 at 629.030 kb on + strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.205 kb on + strand at 629.205 kb on + strand at 629.205 kb on + strand at 629.205 kb on + strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.211 kb on + strand at 629.212 kb on - strand at 629.232 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 626,381 + BPHYT_RS02790 0.63 -0.6 626,381 + BPHYT_RS02790 0.63 +1.1 626,382 - BPHYT_RS02790 0.63 +0.9 626,988 - -0.1 627,005 - -1.6 627,005 - -0.3 627,106 - -3.0 627,110 + +1.5 627,111 - -0.2 627,117 - +0.6 627,117 - +0.9 627,184 + -0.6 627,184 + +0.6 627,184 + +0.2 627,184 + +1.7 627,185 - -1.1 627,185 - +0.3 627,185 - -0.6 627,189 + +0.9 627,190 - +0.1 627,190 - +1.5 627,190 - -1.7 627,499 + BPHYT_RS02795 0.23 -0.2 627,611 - BPHYT_RS02795 0.35 +0.3 627,611 - BPHYT_RS02795 0.35 -0.1 627,612 + BPHYT_RS02795 0.35 -0.4 627,612 + BPHYT_RS02795 0.35 +0.1 627,612 + BPHYT_RS02795 0.35 +0.7 627,613 - BPHYT_RS02795 0.35 -0.2 627,613 - BPHYT_RS02795 0.35 -0.9 627,613 - BPHYT_RS02795 0.35 -0.2 627,952 - BPHYT_RS02795 0.70 +3.2 627,952 - BPHYT_RS02795 0.70 -0.1 628,129 - BPHYT_RS02795 0.88 +2.7 628,129 - BPHYT_RS02795 0.88 +0.7 628,294 + +0.8 628,295 - +0.7 628,321 + +0.6 628,322 - -1.1 628,330 + -1.0 628,330 + -1.0 628,331 - +0.1 628,416 + +0.6 628,459 - +0.3 628,459 - -0.4 628,479 - -0.9 628,479 - +0.8 628,479 - +0.1 628,482 + +0.1 628,482 + -0.3 628,483 - +1.2 628,483 - -1.0 628,483 - -1.2 628,553 + BPHYT_RS02800 0.12 -1.6 628,553 + BPHYT_RS02800 0.12 -0.5 628,554 - BPHYT_RS02800 0.12 -2.1 628,571 + BPHYT_RS02800 0.14 +0.6 628,790 + BPHYT_RS02800 0.45 -0.4 628,790 + BPHYT_RS02800 0.45 -0.3 628,790 + BPHYT_RS02800 0.45 +0.9 628,791 - BPHYT_RS02800 0.46 -0.3 629,030 + BPHYT_RS02800 0.80 -0.4 629,031 - BPHYT_RS02800 0.80 -0.1 629,031 - BPHYT_RS02800 0.80 +1.7 629,031 - BPHYT_RS02800 0.80 -0.1 629,205 + -1.0 629,205 + -3.5 629,205 + +1.9 629,205 + -0.9 629,206 - -0.5 629,206 - +0.7 629,206 - -0.5 629,206 - -0.6 629,206 - -1.1 629,211 + +0.7 629,212 - +0.4 629,232 + +0.2
Or see this region's nucleotide sequence