Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02675 and BPHYT_RS02680 are separated by 67 nucleotides BPHYT_RS02680 and BPHYT_RS02685 are separated by 22 nucleotides BPHYT_RS02685 and BPHYT_RS02690 are separated by 6 nucleotides BPHYT_RS02690 and BPHYT_RS02695 are separated by 4 nucleotides
BPHYT_RS02675: BPHYT_RS02675 - hypothetical protein, at 601,659 to 602,375
_RS02675
BPHYT_RS02680: BPHYT_RS02680 - cytochrome C oxidase subunit I, at 602,443 to 603,105
_RS02680
BPHYT_RS02685: BPHYT_RS02685 - cytochrome C oxidase subunit I, at 603,128 to 604,237
_RS02685
BPHYT_RS02690: BPHYT_RS02690 - protoheme IX farnesyltransferase, at 604,244 to 605,149
_RS02690
BPHYT_RS02695: BPHYT_RS02695 - photosynthetic protein synthase I, at 605,154 to 605,771
_RS02695
Position (kb) 603
604
605 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 602.277 kb on + strand, within BPHYT_RS02675 at 602.278 kb on - strand, within BPHYT_RS02675 at 602.278 kb on - strand, within BPHYT_RS02675 at 602.373 kb on + strand at 602.373 kb on + strand at 602.373 kb on + strand at 602.374 kb on - strand at 602.374 kb on - strand at 602.441 kb on + strand at 602.441 kb on + strand at 602.520 kb on + strand, within BPHYT_RS02680 at 602.520 kb on + strand, within BPHYT_RS02680 at 602.596 kb on + strand, within BPHYT_RS02680 at 602.597 kb on - strand, within BPHYT_RS02680 at 602.608 kb on + strand, within BPHYT_RS02680 at 602.608 kb on + strand, within BPHYT_RS02680 at 602.608 kb on + strand, within BPHYT_RS02680 at 602.609 kb on - strand, within BPHYT_RS02680 at 602.609 kb on - strand, within BPHYT_RS02680 at 602.798 kb on - strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 603.114 kb on + strand at 603.115 kb on - strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.120 kb on + strand at 603.120 kb on + strand at 603.121 kb on - strand at 603.121 kb on - strand at 603.121 kb on - strand at 603.135 kb on + strand at 603.163 kb on + strand at 603.185 kb on + strand at 603.186 kb on - strand at 603.186 kb on - strand at 603.186 kb on - strand at 603.438 kb on - strand, within BPHYT_RS02685 at 603.499 kb on + strand, within BPHYT_RS02685 at 603.499 kb on + strand, within BPHYT_RS02685 at 603.499 kb on + strand, within BPHYT_RS02685 at 603.522 kb on + strand, within BPHYT_RS02685 at 603.522 kb on + strand, within BPHYT_RS02685 at 603.523 kb on - strand, within BPHYT_RS02685 at 603.523 kb on - strand, within BPHYT_RS02685 at 603.614 kb on - strand, within BPHYT_RS02685 at 603.648 kb on + strand, within BPHYT_RS02685 at 603.794 kb on + strand, within BPHYT_RS02685 at 603.980 kb on + strand, within BPHYT_RS02685 at 604.126 kb on + strand, within BPHYT_RS02685 at 604.163 kb on - strand at 604.184 kb on + strand at 604.186 kb on + strand at 604.186 kb on + strand at 604.187 kb on - strand at 604.293 kb on - strand at 604.293 kb on - strand at 604.293 kb on - strand at 604.580 kb on + strand, within BPHYT_RS02690 at 604.580 kb on + strand, within BPHYT_RS02690 at 604.581 kb on - strand, within BPHYT_RS02690 at 604.622 kb on - strand, within BPHYT_RS02690 at 604.646 kb on + strand, within BPHYT_RS02690 at 604.646 kb on + strand, within BPHYT_RS02690 at 604.646 kb on + strand, within BPHYT_RS02690 at 604.647 kb on - strand, within BPHYT_RS02690 at 604.647 kb on - strand, within BPHYT_RS02690 at 604.648 kb on + strand, within BPHYT_RS02690 at 604.839 kb on - strand, within BPHYT_RS02690 at 604.886 kb on + strand, within BPHYT_RS02690 at 604.886 kb on + strand, within BPHYT_RS02690 at 604.886 kb on + strand, within BPHYT_RS02690 at 604.900 kb on + strand, within BPHYT_RS02690 at 604.910 kb on + strand, within BPHYT_RS02690 at 604.910 kb on + strand, within BPHYT_RS02690 at 604.911 kb on - strand, within BPHYT_RS02690 at 604.973 kb on + strand, within BPHYT_RS02690 at 604.973 kb on + strand, within BPHYT_RS02690 at 604.974 kb on - strand, within BPHYT_RS02690 at 605.150 kb on + strand at 605.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 602,277 + BPHYT_RS02675 0.86 -0.1 602,278 - BPHYT_RS02675 0.86 -1.6 602,278 - BPHYT_RS02675 0.86 +0.5 602,373 + +0.2 602,373 + -0.3 602,373 + +0.1 602,374 - +0.6 602,374 - -1.6 602,441 + +3.5 602,441 + +0.6 602,520 + BPHYT_RS02680 0.12 -1.4 602,520 + BPHYT_RS02680 0.12 +0.4 602,596 + BPHYT_RS02680 0.23 -2.4 602,597 - BPHYT_RS02680 0.23 -1.1 602,608 + BPHYT_RS02680 0.25 -0.8 602,608 + BPHYT_RS02680 0.25 -0.6 602,608 + BPHYT_RS02680 0.25 -1.6 602,609 - BPHYT_RS02680 0.25 +0.7 602,609 - BPHYT_RS02680 0.25 -1.6 602,798 - BPHYT_RS02680 0.54 -0.3 602,995 + BPHYT_RS02680 0.83 -2.1 602,995 + BPHYT_RS02680 0.83 -1.6 602,995 + BPHYT_RS02680 0.83 -1.4 602,995 + BPHYT_RS02680 0.83 -1.5 602,995 + BPHYT_RS02680 0.83 -1.3 602,995 + BPHYT_RS02680 0.83 -0.4 602,996 - BPHYT_RS02680 0.83 -1.9 602,996 - BPHYT_RS02680 0.83 -1.9 602,996 - BPHYT_RS02680 0.83 -3.1 602,996 - BPHYT_RS02680 0.83 -1.9 603,114 + -0.7 603,115 - +0.1 603,116 + +0.9 603,116 + +0.9 603,116 + +0.2 603,116 + +0.6 603,116 + +0.8 603,117 - -0.1 603,117 - -1.1 603,117 - +0.6 603,117 - -1.4 603,117 - -1.0 603,117 - -0.5 603,120 + +1.6 603,120 + -0.4 603,121 - -1.4 603,121 - -1.1 603,121 - -1.0 603,135 + -2.6 603,163 + -2.6 603,185 + -1.6 603,186 - -2.8 603,186 - -1.6 603,186 - -6.1 603,438 - BPHYT_RS02685 0.28 -2.9 603,499 + BPHYT_RS02685 0.33 -5.6 603,499 + BPHYT_RS02685 0.33 -4.9 603,499 + BPHYT_RS02685 0.33 -4.5 603,522 + BPHYT_RS02685 0.35 -3.2 603,522 + BPHYT_RS02685 0.35 -5.9 603,523 - BPHYT_RS02685 0.36 -1.9 603,523 - BPHYT_RS02685 0.36 -3.9 603,614 - BPHYT_RS02685 0.44 -3.3 603,648 + BPHYT_RS02685 0.47 -4.7 603,794 + BPHYT_RS02685 0.60 -1.4 603,980 + BPHYT_RS02685 0.77 -2.2 604,126 + BPHYT_RS02685 0.90 -3.1 604,163 - +0.3 604,184 + +1.2 604,186 + -1.0 604,186 + +1.4 604,187 - -3.3 604,293 - -6.7 604,293 - -4.1 604,293 - -1.6 604,580 + BPHYT_RS02690 0.37 -2.5 604,580 + BPHYT_RS02690 0.37 -4.7 604,581 - BPHYT_RS02690 0.37 -1.1 604,622 - BPHYT_RS02690 0.42 +0.5 604,646 + BPHYT_RS02690 0.44 -5.5 604,646 + BPHYT_RS02690 0.44 -4.0 604,646 + BPHYT_RS02690 0.44 -2.8 604,647 - BPHYT_RS02690 0.44 -3.7 604,647 - BPHYT_RS02690 0.44 -3.5 604,648 + BPHYT_RS02690 0.45 -4.9 604,839 - BPHYT_RS02690 0.66 -3.9 604,886 + BPHYT_RS02690 0.71 -2.2 604,886 + BPHYT_RS02690 0.71 -2.2 604,886 + BPHYT_RS02690 0.71 -3.1 604,900 + BPHYT_RS02690 0.72 -3.6 604,910 + BPHYT_RS02690 0.74 -3.7 604,910 + BPHYT_RS02690 0.74 -3.1 604,911 - BPHYT_RS02690 0.74 -2.9 604,973 + BPHYT_RS02690 0.80 -2.5 604,973 + BPHYT_RS02690 0.80 -5.8 604,974 - BPHYT_RS02690 0.81 -0.1 605,150 + +0.9 605,151 - -0.3
Or see this region's nucleotide sequence