Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02585 and BPHYT_RS02590 are separated by 304 nucleotides BPHYT_RS02590 and BPHYT_RS02595 are separated by 138 nucleotides BPHYT_RS02595 and BPHYT_RS02600 overlap by 4 nucleotides BPHYT_RS02600 and BPHYT_RS02605 are separated by 145 nucleotides
BPHYT_RS02585: BPHYT_RS02585 - peptidase S41, at 586,824 to 588,392
_RS02585
BPHYT_RS02590: BPHYT_RS02590 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 588,697 to 589,443
_RS02590
BPHYT_RS02595: BPHYT_RS02595 - sulfurtransferase, at 589,582 to 590,007
_RS02595
BPHYT_RS02600: BPHYT_RS02600 - glutaredoxin, at 590,004 to 590,267
_RS02600
BPHYT_RS02605: BPHYT_RS02605 - protein-export protein SecB, at 590,413 to 590,883
_RS02605
Position (kb) 588
589
590 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 588.451 kb on - strand at 588.451 kb on - strand at 588.451 kb on - strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.453 kb on - strand at 588.453 kb on - strand at 588.550 kb on + strand at 588.550 kb on + strand at 588.550 kb on + strand at 588.550 kb on + strand at 588.551 kb on - strand at 588.551 kb on - strand at 588.764 kb on + strand at 588.764 kb on + strand at 588.764 kb on + strand at 588.765 kb on - strand at 588.803 kb on + strand, within BPHYT_RS02590 at 588.803 kb on + strand, within BPHYT_RS02590 at 588.803 kb on + strand, within BPHYT_RS02590 at 588.804 kb on - strand, within BPHYT_RS02590 at 588.804 kb on - strand, within BPHYT_RS02590 at 588.858 kb on + strand, within BPHYT_RS02590 at 588.858 kb on + strand, within BPHYT_RS02590 at 588.859 kb on - strand, within BPHYT_RS02590 at 588.870 kb on - strand, within BPHYT_RS02590 at 588.870 kb on - strand, within BPHYT_RS02590 at 589.046 kb on + strand, within BPHYT_RS02590 at 589.094 kb on + strand, within BPHYT_RS02590 at 589.217 kb on + strand, within BPHYT_RS02590 at 589.218 kb on - strand, within BPHYT_RS02590 at 589.439 kb on + strand at 589.439 kb on + strand at 589.530 kb on + strand at 589.530 kb on + strand at 589.614 kb on - strand at 589.614 kb on - strand at 589.866 kb on - strand, within BPHYT_RS02595 at 589.903 kb on - strand, within BPHYT_RS02595 at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.101 kb on + strand, within BPHYT_RS02600 at 590.389 kb on + strand at 590.389 kb on + strand at 590.389 kb on + strand at 590.389 kb on + strand at 590.390 kb on - strand at 590.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 588,451 - -0.6 588,451 - -0.3 588,451 - -2.3 588,452 + +0.5 588,452 + -0.1 588,452 + -0.4 588,452 + +0.2 588,453 - +1.5 588,453 - +0.2 588,550 + -0.5 588,550 + -0.6 588,550 + +0.9 588,550 + +0.7 588,551 - +0.9 588,551 - +0.2 588,764 + -0.4 588,764 + -1.6 588,764 + -5.1 588,765 - -1.5 588,803 + BPHYT_RS02590 0.14 -6.3 588,803 + BPHYT_RS02590 0.14 -4.3 588,803 + BPHYT_RS02590 0.14 -1.4 588,804 - BPHYT_RS02590 0.14 -1.1 588,804 - BPHYT_RS02590 0.14 -3.1 588,858 + BPHYT_RS02590 0.22 -3.4 588,858 + BPHYT_RS02590 0.22 -2.8 588,859 - BPHYT_RS02590 0.22 -0.6 588,870 - BPHYT_RS02590 0.23 -4.6 588,870 - BPHYT_RS02590 0.23 -2.6 589,046 + BPHYT_RS02590 0.47 -0.6 589,094 + BPHYT_RS02590 0.53 -3.4 589,217 + BPHYT_RS02590 0.70 -5.3 589,218 - BPHYT_RS02590 0.70 -1.4 589,439 + -1.4 589,439 + -2.5 589,530 + +0.8 589,530 + +0.8 589,614 - -1.9 589,614 - -2.9 589,866 - BPHYT_RS02595 0.67 +1.3 589,903 - BPHYT_RS02595 0.75 +2.5 590,022 + -1.6 590,022 + +0.3 590,022 + +0.4 590,022 + -2.0 590,022 + -1.1 590,101 + BPHYT_RS02600 0.37 -0.2 590,389 + +0.9 590,389 + +0.0 590,389 + -0.2 590,389 + +0.1 590,390 - -0.1 590,390 - +0.9
Or see this region's nucleotide sequence