Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02200 and BPHYT_RS02205 are separated by 20 nucleotides BPHYT_RS02205 and BPHYT_RS02210 are separated by 55 nucleotides BPHYT_RS02210 and BPHYT_RS02215 are separated by 572 nucleotides
BPHYT_RS02200: BPHYT_RS02200 - hypothetical protein, at 504,722 to 506,923
_RS02200
BPHYT_RS02205: BPHYT_RS02205 - hypothetical protein, at 506,944 to 507,855
_RS02205
BPHYT_RS02210: BPHYT_RS02210 - DeoR family transcriptional regulator, at 507,911 to 509,188
_RS02210
BPHYT_RS02215: BPHYT_RS02215 - hypothetical protein, at 509,761 to 510,210
_RS02215
Position (kb) 507
508
509
510 Strain fitness (log2 ratio) -2
-1
0
1 at 507.061 kb on + strand at 507.061 kb on + strand, within BPHYT_RS02205 at 507.062 kb on - strand, within BPHYT_RS02205 at 507.333 kb on - strand, within BPHYT_RS02205 at 507.333 kb on - strand, within BPHYT_RS02205 at 507.339 kb on + strand, within BPHYT_RS02205 at 507.340 kb on - strand, within BPHYT_RS02205 at 507.340 kb on - strand, within BPHYT_RS02205 at 507.825 kb on + strand at 508.021 kb on - strand at 508.023 kb on - strand at 508.372 kb on - strand, within BPHYT_RS02210 at 508.372 kb on - strand, within BPHYT_RS02210 at 508.425 kb on + strand, within BPHYT_RS02210 at 508.473 kb on + strand, within BPHYT_RS02210 at 508.474 kb on - strand, within BPHYT_RS02210 at 508.474 kb on - strand, within BPHYT_RS02210 at 508.529 kb on + strand, within BPHYT_RS02210 at 508.530 kb on - strand, within BPHYT_RS02210 at 508.683 kb on + strand, within BPHYT_RS02210 at 508.684 kb on - strand, within BPHYT_RS02210 at 508.684 kb on - strand, within BPHYT_RS02210 at 508.774 kb on - strand, within BPHYT_RS02210 at 508.774 kb on - strand, within BPHYT_RS02210 at 508.774 kb on - strand, within BPHYT_RS02210 at 509.015 kb on - strand, within BPHYT_RS02210 at 509.034 kb on + strand, within BPHYT_RS02210 at 509.508 kb on + strand at 509.705 kb on + strand at 509.706 kb on + strand at 509.706 kb on + strand at 509.707 kb on - strand at 509.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 507,061 + -0.6 507,061 + BPHYT_RS02205 0.13 -0.4 507,062 - BPHYT_RS02205 0.13 +0.1 507,333 - BPHYT_RS02205 0.43 +0.3 507,333 - BPHYT_RS02205 0.43 +1.6 507,339 + BPHYT_RS02205 0.43 +1.0 507,340 - BPHYT_RS02205 0.43 +0.8 507,340 - BPHYT_RS02205 0.43 +1.6 507,825 + -0.3 508,021 - -1.4 508,023 - -0.3 508,372 - BPHYT_RS02210 0.36 -0.5 508,372 - BPHYT_RS02210 0.36 -1.0 508,425 + BPHYT_RS02210 0.40 -1.2 508,473 + BPHYT_RS02210 0.44 -0.0 508,474 - BPHYT_RS02210 0.44 -0.4 508,474 - BPHYT_RS02210 0.44 -0.0 508,529 + BPHYT_RS02210 0.48 -2.3 508,530 - BPHYT_RS02210 0.48 -1.3 508,683 + BPHYT_RS02210 0.60 -0.6 508,684 - BPHYT_RS02210 0.60 -1.6 508,684 - BPHYT_RS02210 0.60 -2.0 508,774 - BPHYT_RS02210 0.68 -1.6 508,774 - BPHYT_RS02210 0.68 -1.3 508,774 - BPHYT_RS02210 0.68 -0.7 509,015 - BPHYT_RS02210 0.86 -1.0 509,034 + BPHYT_RS02210 0.88 -1.8 509,508 + -1.4 509,705 + +0.0 509,706 + +1.7 509,706 + +0.4 509,707 - +1.1 509,707 - +1.0
Or see this region's nucleotide sequence