Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01290 and BPHYT_RS01295 are separated by 61 nucleotides BPHYT_RS01295 and BPHYT_RS01300 are separated by 87 nucleotides BPHYT_RS01300 and BPHYT_RS01305 are separated by 116 nucleotides
BPHYT_RS01290: BPHYT_RS01290 - FAD dependent oxidoreductase, at 294,921 to 296,360
_RS01290
BPHYT_RS01295: BPHYT_RS01295 - glutathione S-transferase, at 296,422 to 297,096
_RS01295
BPHYT_RS01300: BPHYT_RS01300 - ArsR family transcriptional regulator, at 297,184 to 297,879
_RS01300
BPHYT_RS01305: BPHYT_RS01305 - MFS transporter, at 297,996 to 299,387
_RS01305
Position (kb) 297
298 Strain fitness (log2 ratio) -2
-1
0
1 at 296.278 kb on - strand at 296.292 kb on - strand at 296.307 kb on + strand at 296.308 kb on - strand at 296.335 kb on + strand at 296.437 kb on + strand at 296.460 kb on + strand at 296.460 kb on + strand at 296.461 kb on - strand at 296.480 kb on + strand at 296.639 kb on - strand, within BPHYT_RS01295 at 296.747 kb on + strand, within BPHYT_RS01295 at 296.747 kb on + strand, within BPHYT_RS01295 at 296.748 kb on - strand, within BPHYT_RS01295 at 296.819 kb on + strand, within BPHYT_RS01295 at 296.826 kb on + strand, within BPHYT_RS01295 at 297.059 kb on + strand at 297.094 kb on + strand at 297.193 kb on - strand at 297.196 kb on - strand at 297.339 kb on - strand, within BPHYT_RS01300 at 297.542 kb on + strand, within BPHYT_RS01300 at 297.672 kb on - strand, within BPHYT_RS01300 at 297.672 kb on - strand, within BPHYT_RS01300 at 297.811 kb on - strand at 297.864 kb on + strand at 297.864 kb on + strand at 297.864 kb on + strand at 297.865 kb on - strand at 297.897 kb on + strand at 297.907 kb on + strand at 297.976 kb on - strand at 297.993 kb on + strand at 298.045 kb on + strand at 298.082 kb on - strand at 298.085 kb on + strand at 298.085 kb on + strand at 298.085 kb on + strand at 298.086 kb on - strand at 298.086 kb on - strand at 298.139 kb on + strand, within BPHYT_RS01305 at 298.171 kb on - strand, within BPHYT_RS01305 at 298.173 kb on - strand, within BPHYT_RS01305 at 298.173 kb on - strand, within BPHYT_RS01305 at 298.382 kb on + strand, within BPHYT_RS01305 at 298.382 kb on + strand, within BPHYT_RS01305 at 298.382 kb on + strand, within BPHYT_RS01305 at 298.382 kb on + strand, within BPHYT_RS01305 at 298.538 kb on - strand, within BPHYT_RS01305 at 298.875 kb on + strand, within BPHYT_RS01305
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 296,278 - -0.6 296,292 - +0.8 296,307 + +0.1 296,308 - -0.8 296,335 + -0.2 296,437 + +0.2 296,460 + -0.4 296,460 + -0.0 296,461 - +0.1 296,480 + -0.8 296,639 - BPHYT_RS01295 0.32 -1.1 296,747 + BPHYT_RS01295 0.48 -0.7 296,747 + BPHYT_RS01295 0.48 -0.6 296,748 - BPHYT_RS01295 0.48 -1.3 296,819 + BPHYT_RS01295 0.59 -1.2 296,826 + BPHYT_RS01295 0.60 +0.3 297,059 + -0.5 297,094 + +1.5 297,193 - -1.8 297,196 - +0.1 297,339 - BPHYT_RS01300 0.22 -0.4 297,542 + BPHYT_RS01300 0.51 -2.4 297,672 - BPHYT_RS01300 0.70 -0.4 297,672 - BPHYT_RS01300 0.70 -0.2 297,811 - -1.8 297,864 + +0.0 297,864 + -0.5 297,864 + -0.3 297,865 - -0.2 297,897 + -0.8 297,907 + -1.2 297,976 - +0.2 297,993 + -0.2 298,045 + -1.5 298,082 - +0.6 298,085 + -2.0 298,085 + -1.1 298,085 + -2.5 298,086 - +0.8 298,086 - -0.8 298,139 + BPHYT_RS01305 0.10 +0.8 298,171 - BPHYT_RS01305 0.13 -0.8 298,173 - BPHYT_RS01305 0.13 +0.2 298,173 - BPHYT_RS01305 0.13 -0.1 298,382 + BPHYT_RS01305 0.28 +0.3 298,382 + BPHYT_RS01305 0.28 +1.1 298,382 + BPHYT_RS01305 0.28 +0.1 298,382 + BPHYT_RS01305 0.28 -0.2 298,538 - BPHYT_RS01305 0.39 -1.2 298,875 + BPHYT_RS01305 0.63 +0.1
Or see this region's nucleotide sequence