Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01165 and BPHYT_RS01170 are separated by 772 nucleotides BPHYT_RS01170 and BPHYT_RS01180 are separated by 426 nucleotides
BPHYT_RS01165: BPHYT_RS01165 - hypothetical protein, at 269,301 to 269,642
_RS01165
BPHYT_RS01170: BPHYT_RS01170 - hypothetical protein, at 270,415 to 270,657
_RS01170
BPHYT_RS01180: BPHYT_RS01180 - AraC family transcriptional regulator, at 271,084 to 271,878
_RS01180
Position (kb) 270
271 Strain fitness (log2 ratio) -2
-1
0
1
2 at 269.503 kb on + strand, within BPHYT_RS01165 at 269.504 kb on - strand, within BPHYT_RS01165 at 269.712 kb on - strand at 270.151 kb on + strand at 270.151 kb on + strand at 270.152 kb on - strand at 270.223 kb on - strand at 270.223 kb on - strand at 270.368 kb on + strand at 270.368 kb on + strand at 270.368 kb on + strand at 270.541 kb on + strand, within BPHYT_RS01170 at 270.542 kb on - strand, within BPHYT_RS01170 at 270.544 kb on - strand, within BPHYT_RS01170 at 270.544 kb on - strand, within BPHYT_RS01170 at 270.835 kb on + strand at 270.836 kb on - strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.923 kb on - strand at 270.923 kb on - strand at 270.924 kb on + strand at 270.924 kb on + strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 271.001 kb on - strand at 271.059 kb on - strand at 271.607 kb on + strand, within BPHYT_RS01180 at 271.607 kb on + strand, within BPHYT_RS01180
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 269,503 + BPHYT_RS01165 0.59 +1.1 269,504 - BPHYT_RS01165 0.59 -0.5 269,712 - +0.3 270,151 + -0.6 270,151 + +2.1 270,152 - -0.5 270,223 - +0.1 270,223 - +2.0 270,368 + -1.5 270,368 + -1.0 270,368 + +1.1 270,541 + BPHYT_RS01170 0.52 +1.7 270,542 - BPHYT_RS01170 0.52 +2.0 270,544 - BPHYT_RS01170 0.53 -0.8 270,544 - BPHYT_RS01170 0.53 +1.0 270,835 + -1.0 270,836 - +0.4 270,922 + -1.0 270,922 + -0.1 270,922 + +0.5 270,922 + -1.3 270,922 + -1.6 270,922 + +1.8 270,922 + -0.6 270,923 - -0.6 270,923 - -1.2 270,924 + -1.0 270,924 + -1.9 270,925 - +0.5 270,925 - +2.1 270,925 - -0.6 270,925 - -1.2 270,925 - +0.5 271,001 - +0.8 271,059 - -2.2 271,607 + BPHYT_RS01180 0.66 -0.4 271,607 + BPHYT_RS01180 0.66 -0.0
Or see this region's nucleotide sequence