Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00960 and BPHYT_RS00965 are separated by 276 nucleotides BPHYT_RS00965 and BPHYT_RS00970 are separated by 450 nucleotides BPHYT_RS00970 and BPHYT_RS00975 overlap by 14 nucleotides
BPHYT_RS00960: BPHYT_RS00960 - recombinase RecA, at 221,416 to 222,114
_RS00960
BPHYT_RS00965: BPHYT_RS00965 - ArsR family transcriptional regulator, at 222,391 to 222,723
_RS00965
BPHYT_RS00970: BPHYT_RS00970 - arsenate reductase, at 223,174 to 223,695
_RS00970
BPHYT_RS00975: BPHYT_RS00975 - arsenic transporter, at 223,682 to 224,743
_RS00975
Position (kb) 222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 221.698 kb on + strand, within BPHYT_RS00960 at 221.699 kb on - strand, within BPHYT_RS00960 at 221.699 kb on - strand, within BPHYT_RS00960 at 221.869 kb on - strand, within BPHYT_RS00960 at 222.110 kb on + strand at 222.110 kb on + strand at 222.111 kb on - strand at 222.111 kb on - strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.115 kb on - strand at 222.115 kb on - strand at 222.115 kb on - strand at 222.167 kb on - strand at 222.305 kb on - strand at 222.379 kb on + strand at 222.379 kb on + strand at 222.379 kb on + strand at 222.380 kb on - strand at 222.380 kb on - strand at 222.411 kb on - strand at 222.607 kb on + strand, within BPHYT_RS00965 at 222.755 kb on + strand at 222.756 kb on - strand at 222.756 kb on - strand at 222.777 kb on + strand at 222.777 kb on + strand at 222.778 kb on - strand at 222.778 kb on - strand at 222.866 kb on + strand at 222.867 kb on - strand at 223.005 kb on - strand at 223.018 kb on + strand at 223.190 kb on - strand at 223.252 kb on - strand, within BPHYT_RS00970 at 223.252 kb on - strand, within BPHYT_RS00970 at 223.259 kb on + strand, within BPHYT_RS00970 at 223.260 kb on - strand, within BPHYT_RS00970 at 223.351 kb on + strand, within BPHYT_RS00970 at 223.351 kb on + strand, within BPHYT_RS00970 at 223.374 kb on + strand, within BPHYT_RS00970 at 223.565 kb on - strand, within BPHYT_RS00970 at 223.616 kb on + strand, within BPHYT_RS00970 at 223.616 kb on + strand, within BPHYT_RS00970 at 223.616 kb on + strand, within BPHYT_RS00970
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 221,698 + BPHYT_RS00960 0.40 +0.3 221,699 - BPHYT_RS00960 0.40 -2.5 221,699 - BPHYT_RS00960 0.40 +1.9 221,869 - BPHYT_RS00960 0.65 +0.4 222,110 + +0.7 222,110 + +1.3 222,111 - +0.8 222,111 - -0.2 222,114 + +0.0 222,114 + -0.6 222,114 + -0.7 222,114 + -0.1 222,114 + +0.4 222,114 + +0.2 222,115 - +0.8 222,115 - -0.4 222,115 - +0.6 222,167 - +0.5 222,305 - -1.3 222,379 + -1.3 222,379 + -0.5 222,379 + -1.6 222,380 - -0.2 222,380 - -0.1 222,411 - -0.1 222,607 + BPHYT_RS00965 0.65 -1.8 222,755 + +0.4 222,756 - -0.8 222,756 - -0.5 222,777 + -0.2 222,777 + -0.2 222,778 - +0.2 222,778 - +0.7 222,866 + -0.7 222,867 - -0.8 223,005 - +0.8 223,018 + +2.0 223,190 - -0.5 223,252 - BPHYT_RS00970 0.15 -1.5 223,252 - BPHYT_RS00970 0.15 +0.6 223,259 + BPHYT_RS00970 0.16 -1.0 223,260 - BPHYT_RS00970 0.16 +1.8 223,351 + BPHYT_RS00970 0.34 +0.1 223,351 + BPHYT_RS00970 0.34 -0.3 223,374 + BPHYT_RS00970 0.38 -2.9 223,565 - BPHYT_RS00970 0.75 +0.6 223,616 + BPHYT_RS00970 0.85 +0.8 223,616 + BPHYT_RS00970 0.85 +0.1 223,616 + BPHYT_RS00970 0.85 -0.2
Or see this region's nucleotide sequence