Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00910 and BPHYT_RS00915 are separated by 140 nucleotides BPHYT_RS00915 and BPHYT_RS00920 are separated by 559 nucleotides
BPHYT_RS00910: BPHYT_RS00910 - amidohydrolase, at 208,765 to 209,625
_RS00910
BPHYT_RS00915: BPHYT_RS00915 - IclR family transcriptional regulator, at 209,766 to 210,644
_RS00915
BPHYT_RS00920: BPHYT_RS00920 - transposase, at 211,204 to 212,040
_RS00920
Position (kb) 209
210
211 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 208.873 kb on - strand, within BPHYT_RS00910 at 208.895 kb on - strand, within BPHYT_RS00910 at 209.081 kb on + strand, within BPHYT_RS00910 at 209.081 kb on + strand, within BPHYT_RS00910 at 209.082 kb on - strand, within BPHYT_RS00910 at 209.310 kb on + strand, within BPHYT_RS00910 at 209.310 kb on + strand, within BPHYT_RS00910 at 209.310 kb on + strand, within BPHYT_RS00910 at 209.323 kb on + strand, within BPHYT_RS00910 at 209.324 kb on - strand, within BPHYT_RS00910 at 209.397 kb on - strand, within BPHYT_RS00910 at 209.591 kb on + strand at 209.592 kb on - strand at 209.703 kb on + strand at 209.713 kb on + strand at 209.713 kb on + strand at 209.713 kb on + strand at 209.717 kb on + strand at 209.730 kb on - strand at 209.853 kb on + strand at 209.853 kb on + strand at 209.853 kb on + strand at 209.854 kb on - strand, within BPHYT_RS00915 at 209.854 kb on - strand, within BPHYT_RS00915 at 209.854 kb on - strand, within BPHYT_RS00915 at 209.964 kb on + strand, within BPHYT_RS00915 at 209.964 kb on + strand, within BPHYT_RS00915 at 209.964 kb on + strand, within BPHYT_RS00915 at 209.964 kb on + strand, within BPHYT_RS00915 at 209.965 kb on - strand, within BPHYT_RS00915 at 209.965 kb on - strand, within BPHYT_RS00915 at 209.989 kb on - strand, within BPHYT_RS00915 at 210.167 kb on + strand, within BPHYT_RS00915 at 210.167 kb on + strand, within BPHYT_RS00915 at 210.167 kb on + strand, within BPHYT_RS00915 at 210.273 kb on + strand, within BPHYT_RS00915 at 210.473 kb on + strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.477 kb on + strand, within BPHYT_RS00915 at 210.477 kb on + strand, within BPHYT_RS00915 at 210.478 kb on - strand, within BPHYT_RS00915 at 210.920 kb on + strand at 211.197 kb on - strand at 211.205 kb on + strand at 211.205 kb on + strand at 211.206 kb on - strand at 211.464 kb on - strand, within BPHYT_RS00920 at 211.521 kb on - strand, within BPHYT_RS00920 at 211.550 kb on + strand, within BPHYT_RS00920 at 211.551 kb on - strand, within BPHYT_RS00920
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 208,873 - BPHYT_RS00910 0.13 +0.7 208,895 - BPHYT_RS00910 0.15 +0.5 209,081 + BPHYT_RS00910 0.37 -2.4 209,081 + BPHYT_RS00910 0.37 -0.3 209,082 - BPHYT_RS00910 0.37 -0.8 209,310 + BPHYT_RS00910 0.63 -1.5 209,310 + BPHYT_RS00910 0.63 +0.4 209,310 + BPHYT_RS00910 0.63 -0.1 209,323 + BPHYT_RS00910 0.65 -1.9 209,324 - BPHYT_RS00910 0.65 +2.1 209,397 - BPHYT_RS00910 0.73 -3.0 209,591 + +1.1 209,592 - -1.4 209,703 + -0.1 209,713 + -0.5 209,713 + -0.0 209,713 + -1.3 209,717 + -0.3 209,730 - -1.1 209,853 + -2.1 209,853 + -2.0 209,853 + -3.1 209,854 - BPHYT_RS00915 0.10 -0.1 209,854 - BPHYT_RS00915 0.10 -2.6 209,854 - BPHYT_RS00915 0.10 -3.3 209,964 + BPHYT_RS00915 0.23 -3.1 209,964 + BPHYT_RS00915 0.23 +0.2 209,964 + BPHYT_RS00915 0.23 +0.8 209,964 + BPHYT_RS00915 0.23 -3.2 209,965 - BPHYT_RS00915 0.23 -0.8 209,965 - BPHYT_RS00915 0.23 +0.8 209,989 - BPHYT_RS00915 0.25 +2.1 210,167 + BPHYT_RS00915 0.46 -1.1 210,167 + BPHYT_RS00915 0.46 -1.3 210,167 + BPHYT_RS00915 0.46 -0.9 210,273 + BPHYT_RS00915 0.58 -1.6 210,473 + BPHYT_RS00915 0.80 -3.0 210,474 - BPHYT_RS00915 0.81 -2.0 210,474 - BPHYT_RS00915 0.81 -0.2 210,474 - BPHYT_RS00915 0.81 -0.8 210,474 - BPHYT_RS00915 0.81 -4.0 210,474 - BPHYT_RS00915 0.81 -2.2 210,477 + BPHYT_RS00915 0.81 -1.5 210,477 + BPHYT_RS00915 0.81 -3.1 210,478 - BPHYT_RS00915 0.81 -4.0 210,920 + +2.1 211,197 - +0.6 211,205 + +0.2 211,205 + +1.5 211,206 - -0.7 211,464 - BPHYT_RS00920 0.31 +1.2 211,521 - BPHYT_RS00920 0.38 +0.0 211,550 + BPHYT_RS00920 0.41 +0.0 211,551 - BPHYT_RS00920 0.41 -0.3
Or see this region's nucleotide sequence