Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00720 and BPHYT_RS00725 overlap by 4 nucleotides BPHYT_RS00725 and BPHYT_RS00730 are separated by 81 nucleotides
BPHYT_RS00720: BPHYT_RS00720 - amidase, at 167,570 to 168,997
_RS00720
BPHYT_RS00725: BPHYT_RS00725 - hypothetical protein, at 168,994 to 169,539
_RS00725
BPHYT_RS00730: BPHYT_RS00730 - porin, at 169,621 to 170,655
_RS00730
Position (kb) 168
169
170 Strain fitness (log2 ratio) -1
0
1
2
3 at 168.492 kb on - strand, within BPHYT_RS00720 at 168.495 kb on - strand, within BPHYT_RS00720 at 168.695 kb on - strand, within BPHYT_RS00720 at 168.851 kb on - strand, within BPHYT_RS00720 at 168.921 kb on - strand at 168.921 kb on - strand at 168.921 kb on - strand at 168.921 kb on - strand at 168.921 kb on - strand at 168.921 kb on - strand at 169.287 kb on - strand, within BPHYT_RS00725 at 169.482 kb on - strand, within BPHYT_RS00725 at 169.616 kb on + strand at 169.617 kb on - strand at 169.624 kb on + strand at 169.624 kb on + strand at 169.718 kb on + strand at 169.912 kb on + strand, within BPHYT_RS00730 at 170.140 kb on + strand, within BPHYT_RS00730 at 170.182 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.225 kb on - strand, within BPHYT_RS00730 at 170.242 kb on + strand, within BPHYT_RS00730 at 170.383 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 168,492 - BPHYT_RS00720 0.65 -1.1 168,495 - BPHYT_RS00720 0.65 -0.3 168,695 - BPHYT_RS00720 0.79 -0.1 168,851 - BPHYT_RS00720 0.90 +0.1 168,921 - +1.0 168,921 - -0.9 168,921 - -1.2 168,921 - +0.3 168,921 - -0.9 168,921 - +0.2 169,287 - BPHYT_RS00725 0.54 -0.6 169,482 - BPHYT_RS00725 0.89 -1.7 169,616 + -0.6 169,617 - -0.6 169,624 + +0.0 169,624 + +0.1 169,718 + -0.8 169,912 + BPHYT_RS00730 0.28 +0.4 170,140 + BPHYT_RS00730 0.50 +0.8 170,182 + BPHYT_RS00730 0.54 -0.2 170,224 + BPHYT_RS00730 0.58 +0.1 170,224 + BPHYT_RS00730 0.58 +0.6 170,224 + BPHYT_RS00730 0.58 -1.3 170,224 + BPHYT_RS00730 0.58 -0.6 170,224 + BPHYT_RS00730 0.58 -0.1 170,224 + BPHYT_RS00730 0.58 +0.4 170,225 - BPHYT_RS00730 0.58 +0.6 170,242 + BPHYT_RS00730 0.60 +0.2 170,383 + BPHYT_RS00730 0.74 -0.3 170,465 + BPHYT_RS00730 0.82 -0.5 170,465 + BPHYT_RS00730 0.82 -0.2 170,465 + BPHYT_RS00730 0.82 -0.2 170,465 + BPHYT_RS00730 0.82 -0.3 170,466 - +2.8
Or see this region's nucleotide sequence