Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00675 and BPHYT_RS00680 are separated by 54 nucleotides BPHYT_RS00680 and BPHYT_RS00685 are separated by 330 nucleotides BPHYT_RS00685 and BPHYT_RS00690 are separated by 57 nucleotides
BPHYT_RS00675: BPHYT_RS00675 - GntR family transcriptional regulator, at 159,334 to 160,170
_RS00675
BPHYT_RS00680: BPHYT_RS00680 - amidase, at 160,225 to 161,649
_RS00680
BPHYT_RS00685: BPHYT_RS00685 - transcriptional regulator, at 161,980 to 162,309
_RS00685
BPHYT_RS00690: BPHYT_RS00690 - transcriptional regulator, at 162,367 to 162,726
_RS00690
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 159.287 kb on + strand at 159.320 kb on + strand at 159.320 kb on + strand at 159.321 kb on - strand at 159.321 kb on - strand at 159.333 kb on + strand at 159.333 kb on + strand at 159.333 kb on + strand at 159.334 kb on - strand at 159.606 kb on + strand, within BPHYT_RS00675 at 159.607 kb on - strand, within BPHYT_RS00675 at 159.649 kb on + strand, within BPHYT_RS00675 at 159.650 kb on - strand, within BPHYT_RS00675 at 159.685 kb on + strand, within BPHYT_RS00675 at 159.685 kb on + strand, within BPHYT_RS00675 at 159.685 kb on + strand, within BPHYT_RS00675 at 159.686 kb on - strand, within BPHYT_RS00675 at 159.686 kb on - strand, within BPHYT_RS00675 at 159.714 kb on - strand, within BPHYT_RS00675 at 159.783 kb on - strand, within BPHYT_RS00675 at 159.921 kb on + strand, within BPHYT_RS00675 at 159.922 kb on - strand, within BPHYT_RS00675 at 159.961 kb on + strand, within BPHYT_RS00675 at 159.962 kb on - strand, within BPHYT_RS00675 at 159.962 kb on - strand, within BPHYT_RS00675 at 160.216 kb on + strand at 160.220 kb on + strand at 160.220 kb on + strand at 160.221 kb on - strand at 160.221 kb on - strand at 160.221 kb on - strand at 160.242 kb on + strand at 160.401 kb on - strand, within BPHYT_RS00680 at 160.405 kb on - strand, within BPHYT_RS00680 at 160.405 kb on - strand, within BPHYT_RS00680 at 160.405 kb on - strand, within BPHYT_RS00680 at 160.505 kb on + strand, within BPHYT_RS00680 at 160.506 kb on - strand, within BPHYT_RS00680 at 160.506 kb on - strand, within BPHYT_RS00680 at 160.506 kb on - strand, within BPHYT_RS00680 at 160.506 kb on - strand, within BPHYT_RS00680 at 160.628 kb on + strand, within BPHYT_RS00680 at 160.628 kb on + strand, within BPHYT_RS00680 at 160.629 kb on - strand, within BPHYT_RS00680 at 160.629 kb on - strand, within BPHYT_RS00680 at 160.681 kb on - strand, within BPHYT_RS00680 at 160.856 kb on + strand, within BPHYT_RS00680 at 160.856 kb on + strand, within BPHYT_RS00680 at 160.856 kb on + strand, within BPHYT_RS00680 at 160.857 kb on - strand, within BPHYT_RS00680 at 160.857 kb on - strand, within BPHYT_RS00680 at 160.857 kb on - strand, within BPHYT_RS00680 at 160.862 kb on - strand, within BPHYT_RS00680 at 160.907 kb on + strand, within BPHYT_RS00680 at 160.934 kb on + strand, within BPHYT_RS00680 at 161.013 kb on + strand, within BPHYT_RS00680 at 161.085 kb on + strand, within BPHYT_RS00680 at 161.151 kb on + strand, within BPHYT_RS00680 at 161.151 kb on + strand, within BPHYT_RS00680 at 161.209 kb on - strand, within BPHYT_RS00680 at 161.507 kb on - strand at 161.599 kb on - strand at 161.599 kb on - strand at 161.601 kb on - strand at 161.601 kb on - strand at 161.601 kb on - strand at 161.602 kb on + strand at 161.603 kb on - strand at 161.649 kb on + strand at 161.649 kb on + strand at 161.649 kb on + strand at 161.650 kb on - strand at 161.650 kb on - strand at 161.673 kb on + strand at 161.684 kb on + strand at 161.781 kb on - strand at 161.787 kb on - strand at 161.837 kb on + strand at 162.086 kb on + strand, within BPHYT_RS00685 at 162.140 kb on - strand, within BPHYT_RS00685 at 162.292 kb on - strand at 162.298 kb on - strand at 162.634 kb on - strand, within BPHYT_RS00690
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 159,287 + -0.1 159,320 + -2.2 159,320 + +0.1 159,321 - -1.8 159,321 - -3.5 159,333 + -0.8 159,333 + +0.5 159,333 + -2.7 159,334 - -1.4 159,606 + BPHYT_RS00675 0.32 +0.8 159,607 - BPHYT_RS00675 0.33 -1.9 159,649 + BPHYT_RS00675 0.38 +1.1 159,650 - BPHYT_RS00675 0.38 -0.7 159,685 + BPHYT_RS00675 0.42 -0.7 159,685 + BPHYT_RS00675 0.42 -1.6 159,685 + BPHYT_RS00675 0.42 +0.1 159,686 - BPHYT_RS00675 0.42 -1.1 159,686 - BPHYT_RS00675 0.42 +0.8 159,714 - BPHYT_RS00675 0.45 -1.0 159,783 - BPHYT_RS00675 0.54 -1.8 159,921 + BPHYT_RS00675 0.70 +1.8 159,922 - BPHYT_RS00675 0.70 -1.4 159,961 + BPHYT_RS00675 0.75 -0.6 159,962 - BPHYT_RS00675 0.75 -1.2 159,962 - BPHYT_RS00675 0.75 -2.1 160,216 + -1.1 160,220 + +0.6 160,220 + -1.0 160,221 - -0.8 160,221 - -0.2 160,221 - -0.0 160,242 + -0.8 160,401 - BPHYT_RS00680 0.12 +0.8 160,405 - BPHYT_RS00680 0.13 -0.8 160,405 - BPHYT_RS00680 0.13 -0.3 160,405 - BPHYT_RS00680 0.13 +0.1 160,505 + BPHYT_RS00680 0.20 +0.9 160,506 - BPHYT_RS00680 0.20 +0.3 160,506 - BPHYT_RS00680 0.20 +0.4 160,506 - BPHYT_RS00680 0.20 -0.6 160,506 - BPHYT_RS00680 0.20 +1.3 160,628 + BPHYT_RS00680 0.28 -0.5 160,628 + BPHYT_RS00680 0.28 -0.2 160,629 - BPHYT_RS00680 0.28 -1.5 160,629 - BPHYT_RS00680 0.28 +0.9 160,681 - BPHYT_RS00680 0.32 +0.4 160,856 + BPHYT_RS00680 0.44 -1.0 160,856 + BPHYT_RS00680 0.44 -1.3 160,856 + BPHYT_RS00680 0.44 -0.5 160,857 - BPHYT_RS00680 0.44 -0.3 160,857 - BPHYT_RS00680 0.44 -1.1 160,857 - BPHYT_RS00680 0.44 +0.3 160,862 - BPHYT_RS00680 0.45 +0.2 160,907 + BPHYT_RS00680 0.48 +0.8 160,934 + BPHYT_RS00680 0.50 +1.4 161,013 + BPHYT_RS00680 0.55 -0.2 161,085 + BPHYT_RS00680 0.60 +1.7 161,151 + BPHYT_RS00680 0.65 +1.7 161,151 + BPHYT_RS00680 0.65 +0.4 161,209 - BPHYT_RS00680 0.69 -1.2 161,507 - +0.7 161,599 - -0.3 161,599 - +1.1 161,601 - +0.7 161,601 - +0.5 161,601 - +0.6 161,602 + -0.3 161,603 - +0.9 161,649 + +0.5 161,649 + -1.7 161,649 + -0.3 161,650 - -0.1 161,650 - -0.3 161,673 + -0.2 161,684 + -0.5 161,781 - -2.0 161,787 - +0.2 161,837 + -1.7 162,086 + BPHYT_RS00685 0.32 +1.0 162,140 - BPHYT_RS00685 0.48 -0.0 162,292 - -0.8 162,298 - +0.1 162,634 - BPHYT_RS00690 0.74 -1.5
Or see this region's nucleotide sequence