Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00520 and BPHYT_RS00525 are separated by 369 nucleotides BPHYT_RS00525 and BPHYT_RS00530 are separated by 598 nucleotides BPHYT_RS00530 and BPHYT_RS00535 are separated by 50 nucleotides
BPHYT_RS00520: BPHYT_RS00520 - glutamate--cysteine ligase, at 125,255 to 126,853
_RS00520
BPHYT_RS00525: BPHYT_RS00525 - aldehyde dismutase, at 127,223 to 128,437
_RS00525
BPHYT_RS00530: BPHYT_RS00530 - hypothetical protein, at 129,036 to 129,230
_RS00530
BPHYT_RS00535: BPHYT_RS00535 - AraC family transcriptional regulator, at 129,281 to 130,255
_RS00535
Position (kb) 127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 126.279 kb on + strand, within BPHYT_RS00520 at 126.280 kb on - strand, within BPHYT_RS00520 at 126.307 kb on + strand, within BPHYT_RS00520 at 126.307 kb on + strand, within BPHYT_RS00520 at 126.308 kb on - strand, within BPHYT_RS00520 at 126.309 kb on + strand, within BPHYT_RS00520 at 126.310 kb on - strand, within BPHYT_RS00520 at 126.310 kb on - strand, within BPHYT_RS00520 at 126.399 kb on + strand, within BPHYT_RS00520 at 126.399 kb on + strand, within BPHYT_RS00520 at 126.399 kb on + strand, within BPHYT_RS00520 at 126.427 kb on + strand, within BPHYT_RS00520 at 126.495 kb on + strand, within BPHYT_RS00520 at 126.495 kb on + strand at 126.495 kb on + strand, within BPHYT_RS00520 at 126.496 kb on - strand, within BPHYT_RS00520 at 126.496 kb on - strand, within BPHYT_RS00520 at 126.496 kb on - strand, within BPHYT_RS00520 at 126.848 kb on - strand at 126.849 kb on + strand at 126.850 kb on - strand at 126.850 kb on - strand at 126.883 kb on - strand at 126.924 kb on + strand at 126.996 kb on - strand at 127.022 kb on - strand at 127.101 kb on - strand at 127.185 kb on + strand at 127.217 kb on - strand at 127.257 kb on + strand at 127.257 kb on + strand at 127.290 kb on + strand at 127.290 kb on + strand at 127.348 kb on - strand, within BPHYT_RS00525 at 127.512 kb on + strand, within BPHYT_RS00525 at 127.552 kb on - strand, within BPHYT_RS00525 at 127.632 kb on + strand, within BPHYT_RS00525 at 127.632 kb on + strand, within BPHYT_RS00525 at 127.864 kb on + strand, within BPHYT_RS00525 at 127.864 kb on + strand, within BPHYT_RS00525 at 127.864 kb on + strand, within BPHYT_RS00525 at 127.864 kb on + strand, within BPHYT_RS00525 at 127.864 kb on + strand, within BPHYT_RS00525 at 127.864 kb on + strand, within BPHYT_RS00525 at 127.865 kb on - strand, within BPHYT_RS00525 at 127.866 kb on + strand, within BPHYT_RS00525 at 127.867 kb on - strand, within BPHYT_RS00525 at 128.019 kb on + strand, within BPHYT_RS00525 at 128.020 kb on - strand, within BPHYT_RS00525 at 128.089 kb on + strand, within BPHYT_RS00525 at 128.089 kb on + strand, within BPHYT_RS00525 at 128.272 kb on - strand, within BPHYT_RS00525 at 128.465 kb on + strand at 128.524 kb on - strand at 128.721 kb on - strand at 128.946 kb on + strand at 128.947 kb on - strand at 129.098 kb on + strand, within BPHYT_RS00530 at 129.147 kb on - strand, within BPHYT_RS00530 at 129.233 kb on + strand at 129.233 kb on + strand at 129.234 kb on - strand at 129.252 kb on + strand at 129.252 kb on + strand at 129.253 kb on - strand at 129.298 kb on + strand at 129.307 kb on + strand at 129.351 kb on - strand at 129.351 kb on - strand at 129.351 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 126,279 + BPHYT_RS00520 0.64 -0.2 126,280 - BPHYT_RS00520 0.64 -1.0 126,307 + BPHYT_RS00520 0.66 -0.4 126,307 + BPHYT_RS00520 0.66 -1.2 126,308 - BPHYT_RS00520 0.66 -3.2 126,309 + BPHYT_RS00520 0.66 +0.6 126,310 - BPHYT_RS00520 0.66 -1.8 126,310 - BPHYT_RS00520 0.66 -1.5 126,399 + BPHYT_RS00520 0.72 +0.4 126,399 + BPHYT_RS00520 0.72 -0.5 126,399 + BPHYT_RS00520 0.72 -0.6 126,427 + BPHYT_RS00520 0.73 +1.4 126,495 + BPHYT_RS00520 0.78 -1.5 126,495 + -0.2 126,495 + BPHYT_RS00520 0.78 -1.4 126,496 - BPHYT_RS00520 0.78 -0.2 126,496 - BPHYT_RS00520 0.78 +1.4 126,496 - BPHYT_RS00520 0.78 +0.1 126,848 - -0.0 126,849 + -0.3 126,850 - -0.8 126,850 - +2.4 126,883 - +0.1 126,924 + -1.2 126,996 - -0.8 127,022 - +0.8 127,101 - -0.3 127,185 + -0.4 127,217 - +0.2 127,257 + +2.4 127,257 + +0.3 127,290 + +1.1 127,290 + -0.2 127,348 - BPHYT_RS00525 0.10 +0.6 127,512 + BPHYT_RS00525 0.24 -1.7 127,552 - BPHYT_RS00525 0.27 +0.5 127,632 + BPHYT_RS00525 0.34 -0.6 127,632 + BPHYT_RS00525 0.34 +0.3 127,864 + BPHYT_RS00525 0.53 +0.8 127,864 + BPHYT_RS00525 0.53 +0.5 127,864 + BPHYT_RS00525 0.53 -0.1 127,864 + BPHYT_RS00525 0.53 -1.5 127,864 + BPHYT_RS00525 0.53 -2.2 127,864 + BPHYT_RS00525 0.53 -0.5 127,865 - BPHYT_RS00525 0.53 -2.9 127,866 + BPHYT_RS00525 0.53 -1.2 127,867 - BPHYT_RS00525 0.53 +0.5 128,019 + BPHYT_RS00525 0.66 -1.4 128,020 - BPHYT_RS00525 0.66 +0.6 128,089 + BPHYT_RS00525 0.71 -0.2 128,089 + BPHYT_RS00525 0.71 -0.8 128,272 - BPHYT_RS00525 0.86 +0.5 128,465 + +0.5 128,524 - +0.6 128,721 - -0.9 128,946 + +1.4 128,947 - -0.9 129,098 + BPHYT_RS00530 0.32 +0.7 129,147 - BPHYT_RS00530 0.57 +0.1 129,233 + +0.4 129,233 + -0.4 129,234 - -1.2 129,252 + -0.2 129,252 + -0.4 129,253 - +1.4 129,298 + -3.0 129,307 + +2.1 129,351 - -0.6 129,351 - -0.4 129,351 - +0.4
Or see this region's nucleotide sequence