Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00480

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00475 and BPHYT_RS00480 are separated by 523 nucleotidesBPHYT_RS00480 and BPHYT_RS00485 are separated by 57 nucleotides BPHYT_RS00475: BPHYT_RS00475 - hypothetical protein, at 114,240 to 114,818 _RS00475 BPHYT_RS00480: BPHYT_RS00480 - excinuclease ABC subunit A, at 115,342 to 117,990 _RS00480 BPHYT_RS00485: BPHYT_RS00485 - ATPase, AAA family, at 118,048 to 119,361 _RS00485 Position (kb) 115 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2 3at 115.150 kb on + strandat 115.294 kb on + strandat 115.294 kb on + strandat 115.294 kb on + strandat 115.294 kb on + strandat 115.524 kb on + strandat 115.613 kb on + strand, within BPHYT_RS00480at 115.613 kb on + strand, within BPHYT_RS00480at 115.716 kb on - strand, within BPHYT_RS00480at 115.745 kb on - strand, within BPHYT_RS00480at 115.863 kb on - strand, within BPHYT_RS00480at 115.863 kb on - strand, within BPHYT_RS00480at 116.063 kb on + strand, within BPHYT_RS00480at 116.063 kb on + strand, within BPHYT_RS00480at 116.063 kb on + strand, within BPHYT_RS00480at 116.064 kb on - strand, within BPHYT_RS00480at 116.064 kb on - strand, within BPHYT_RS00480at 116.625 kb on - strand, within BPHYT_RS00480at 116.625 kb on - strand, within BPHYT_RS00480at 116.674 kb on + strand, within BPHYT_RS00480at 116.675 kb on - strand, within BPHYT_RS00480at 116.675 kb on - strand, within BPHYT_RS00480at 116.678 kb on + strand, within BPHYT_RS00480at 116.678 kb on + strand, within BPHYT_RS00480at 116.679 kb on - strand, within BPHYT_RS00480at 117.230 kb on + strand, within BPHYT_RS00480at 117.290 kb on + strand, within BPHYT_RS00480at 117.291 kb on - strand, within BPHYT_RS00480at 117.378 kb on - strand, within BPHYT_RS00480at 117.500 kb on + strand, within BPHYT_RS00480at 117.501 kb on - strand, within BPHYT_RS00480at 117.501 kb on - strand, within BPHYT_RS00480at 117.501 kb on - strand, within BPHYT_RS00480at 117.569 kb on + strand, within BPHYT_RS00480at 117.611 kb on + strand, within BPHYT_RS00480at 117.611 kb on + strand, within BPHYT_RS00480at 117.611 kb on + strand, within BPHYT_RS00480at 117.611 kb on + strand, within BPHYT_RS00480at 117.611 kb on + strand, within BPHYT_RS00480at 117.612 kb on - strand, within BPHYT_RS00480at 117.612 kb on - strand, within BPHYT_RS00480at 117.612 kb on - strand, within BPHYT_RS00480at 117.612 kb on - strand, within BPHYT_RS00480at 118.003 kb on + strandat 118.178 kb on + strandat 118.343 kb on + strand, within BPHYT_RS00485at 118.343 kb on + strand, within BPHYT_RS00485at 118.344 kb on - strand, within BPHYT_RS00485at 118.377 kb on - strand, within BPHYT_RS00485at 118.430 kb on + strand, within BPHYT_RS00485at 118.431 kb on - strand, within BPHYT_RS00485at 118.565 kb on + strand, within BPHYT_RS00485at 118.626 kb on - strand, within BPHYT_RS00485at 118.626 kb on - strand, within BPHYT_RS00485at 118.626 kb on - strand, within BPHYT_RS00485at 118.887 kb on + strand, within BPHYT_RS00485at 118.889 kb on + strand, within BPHYT_RS00485at 118.889 kb on + strand, within BPHYT_RS00485at 118.890 kb on - strand, within BPHYT_RS00485at 118.890 kb on - strand, within BPHYT_RS00485at 118.948 kb on - strand, within BPHYT_RS00485

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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115,150 + +0.3
115,294 + -0.4
115,294 + -0.5
115,294 + +0.8
115,294 + +0.6
115,524 + +0.3
115,613 + BPHYT_RS00480 0.10 +0.5
115,613 + BPHYT_RS00480 0.10 -0.2
115,716 - BPHYT_RS00480 0.14 +0.1
115,745 - BPHYT_RS00480 0.15 -0.1
115,863 - BPHYT_RS00480 0.20 -2.5
115,863 - BPHYT_RS00480 0.20 -0.8
116,063 + BPHYT_RS00480 0.27 +0.8
116,063 + BPHYT_RS00480 0.27 -1.2
116,063 + BPHYT_RS00480 0.27 +1.4
116,064 - BPHYT_RS00480 0.27 -0.4
116,064 - BPHYT_RS00480 0.27 -0.8
116,625 - BPHYT_RS00480 0.48 -1.3
116,625 - BPHYT_RS00480 0.48 -2.3
116,674 + BPHYT_RS00480 0.50 +0.2
116,675 - BPHYT_RS00480 0.50 -1.5
116,675 - BPHYT_RS00480 0.50 -2.4
116,678 + BPHYT_RS00480 0.50 -0.0
116,678 + BPHYT_RS00480 0.50 -0.6
116,679 - BPHYT_RS00480 0.50 -0.6
117,230 + BPHYT_RS00480 0.71 +0.5
117,290 + BPHYT_RS00480 0.74 +0.8
117,291 - BPHYT_RS00480 0.74 +0.0
117,378 - BPHYT_RS00480 0.77 -0.8
117,500 + BPHYT_RS00480 0.81 -1.0
117,501 - BPHYT_RS00480 0.82 +0.5
117,501 - BPHYT_RS00480 0.82 -0.3
117,501 - BPHYT_RS00480 0.82 +0.2
117,569 + BPHYT_RS00480 0.84 +1.1
117,611 + BPHYT_RS00480 0.86 -0.4
117,611 + BPHYT_RS00480 0.86 -0.6
117,611 + BPHYT_RS00480 0.86 -1.2
117,611 + BPHYT_RS00480 0.86 +0.3
117,611 + BPHYT_RS00480 0.86 -1.2
117,612 - BPHYT_RS00480 0.86 -0.4
117,612 - BPHYT_RS00480 0.86 -2.2
117,612 - BPHYT_RS00480 0.86 +3.1
117,612 - BPHYT_RS00480 0.86 -0.2
118,003 + -2.5
118,178 + +2.1
118,343 + BPHYT_RS00485 0.22 +0.6
118,343 + BPHYT_RS00485 0.22 -2.5
118,344 - BPHYT_RS00485 0.23 -1.2
118,377 - BPHYT_RS00485 0.25 -1.2
118,430 + BPHYT_RS00485 0.29 +1.1
118,431 - BPHYT_RS00485 0.29 -2.3
118,565 + BPHYT_RS00485 0.39 -0.0
118,626 - BPHYT_RS00485 0.44 -0.7
118,626 - BPHYT_RS00485 0.44 -0.8
118,626 - BPHYT_RS00485 0.44 +0.2
118,887 + BPHYT_RS00485 0.64 +1.4
118,889 + BPHYT_RS00485 0.64 +0.4
118,889 + BPHYT_RS00485 0.64 -0.9
118,890 - BPHYT_RS00485 0.64 -1.5
118,890 - BPHYT_RS00485 0.64 -0.3
118,948 - BPHYT_RS00485 0.68 +0.2

Or see this region's nucleotide sequence