Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00385 and BPHYT_RS00390 are separated by 229 nucleotides BPHYT_RS00390 and BPHYT_RS00395 are separated by 259 nucleotides
BPHYT_RS00385: BPHYT_RS00385 - decarboxylase, at 96,224 to 97,567
_RS00385
BPHYT_RS00390: BPHYT_RS00390 - AraC family transcriptional regulator, at 97,797 to 98,831
_RS00390
BPHYT_RS00395: BPHYT_RS00395 - aldehyde dehydrogenase, at 99,091 to 100,518
_RS00395
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 96.832 kb on + strand, within BPHYT_RS00385 at 96.993 kb on - strand, within BPHYT_RS00385 at 97.218 kb on + strand, within BPHYT_RS00385 at 97.557 kb on + strand at 97.557 kb on + strand at 97.690 kb on + strand at 97.758 kb on + strand at 97.918 kb on + strand, within BPHYT_RS00390 at 97.918 kb on + strand, within BPHYT_RS00390 at 97.919 kb on - strand, within BPHYT_RS00390 at 97.919 kb on - strand, within BPHYT_RS00390 at 97.919 kb on - strand, within BPHYT_RS00390 at 97.920 kb on + strand, within BPHYT_RS00390 at 97.920 kb on + strand, within BPHYT_RS00390 at 97.920 kb on + strand, within BPHYT_RS00390 at 97.971 kb on - strand, within BPHYT_RS00390 at 98.176 kb on - strand, within BPHYT_RS00390 at 98.235 kb on + strand, within BPHYT_RS00390 at 98.409 kb on + strand, within BPHYT_RS00390 at 98.434 kb on + strand, within BPHYT_RS00390 at 98.498 kb on - strand, within BPHYT_RS00390 at 98.498 kb on - strand, within BPHYT_RS00390 at 98.659 kb on - strand, within BPHYT_RS00390 at 98.990 kb on + strand at 98.991 kb on - strand at 99.014 kb on - strand at 99.069 kb on + strand at 99.070 kb on - strand at 99.099 kb on + strand at 99.351 kb on - strand, within BPHYT_RS00395 at 99.351 kb on - strand, within BPHYT_RS00395 at 99.360 kb on + strand, within BPHYT_RS00395 at 99.393 kb on - strand at 99.447 kb on + strand, within BPHYT_RS00395 at 99.452 kb on - strand, within BPHYT_RS00395
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 96,832 + BPHYT_RS00385 0.45 +0.2 96,993 - BPHYT_RS00385 0.57 +0.6 97,218 + BPHYT_RS00385 0.74 -0.0 97,557 + -0.5 97,557 + +0.6 97,690 + -0.0 97,758 + -0.3 97,918 + BPHYT_RS00390 0.12 +1.8 97,918 + BPHYT_RS00390 0.12 -0.2 97,919 - BPHYT_RS00390 0.12 +0.1 97,919 - BPHYT_RS00390 0.12 +0.4 97,919 - BPHYT_RS00390 0.12 -0.4 97,920 + BPHYT_RS00390 0.12 +0.8 97,920 + BPHYT_RS00390 0.12 -0.8 97,920 + BPHYT_RS00390 0.12 +0.7 97,971 - BPHYT_RS00390 0.17 +0.1 98,176 - BPHYT_RS00390 0.37 -0.7 98,235 + BPHYT_RS00390 0.42 +3.1 98,409 + BPHYT_RS00390 0.59 +0.4 98,434 + BPHYT_RS00390 0.62 -2.4 98,498 - BPHYT_RS00390 0.68 -1.8 98,498 - BPHYT_RS00390 0.68 -0.8 98,659 - BPHYT_RS00390 0.83 +0.8 98,990 + +2.4 98,991 - +0.8 99,014 - -0.0 99,069 + -1.5 99,070 - +0.2 99,099 + +1.2 99,351 - BPHYT_RS00395 0.18 -1.1 99,351 - BPHYT_RS00395 0.18 -1.6 99,360 + BPHYT_RS00395 0.19 +0.4 99,393 - -1.2 99,447 + BPHYT_RS00395 0.25 +0.7 99,452 - BPHYT_RS00395 0.25 -2.8
Or see this region's nucleotide sequence