Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00320

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
79,925	+				-0.1
79,925	+				+0.7
79,926	-				-0.2
79,926	-				+0.2
79,926	-				-0.9
79,944	-				-0.9
79,944	-				-0.8
80,470	+		BPHYT_RS00320	0.42	+1.8
80,471	-		BPHYT_RS00320	0.42	+0.4
80,643	+		BPHYT_RS00320	0.57	+0.2
80,643	+		BPHYT_RS00320	0.57	+0.6
80,644	-		BPHYT_RS00320	0.57	+0.2
80,644	-		BPHYT_RS00320	0.57	+0.3
80,644	-		BPHYT_RS00320	0.57	-0.6
80,644	-		BPHYT_RS00320	0.57	-0.3
80,670	-		BPHYT_RS00320	0.60	-1.2
80,825	-		BPHYT_RS00320	0.73	-0.5
80,875	+		BPHYT_RS00320	0.78	+0.3
80,908	+		BPHYT_RS00320	0.81	-1.8
80,987	-		BPHYT_RS00320	0.87	-0.1
80,987	-		BPHYT_RS00320	0.87	+0.1
81,076	-				+0.2
81,082	+				-1.8
81,387	-				-0.8
81,444	+				+0.1
81,448	+				-0.7
81,568	+				-1.7
81,569	-				-1.0
81,653	+				-0.3
81,682	-				-0.1
81,833	+				+0.5
81,912	-				-0.2
81,912	-				-0.0
81,980	+				-1.8
81,981	-				-0.2
82,023	+				-1.2
82,023	+				+1.7
82,112	+				+0.3
82,112	+				-1.1