Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00290 and BPHYT_RS00295 are separated by 8 nucleotides BPHYT_RS00295 and BPHYT_RS00300 are separated by 118 nucleotides BPHYT_RS00300 and BPHYT_RS00305 are separated by 20 nucleotides
BPHYT_RS00290: BPHYT_RS00290 - hypothetical protein, at 73,237 to 74,064
_RS00290
BPHYT_RS00295: BPHYT_RS00295 - hypothetical protein, at 74,073 to 74,495
_RS00295
BPHYT_RS00300: BPHYT_RS00300 - urease accessory protein UreF, at 74,614 to 75,306
_RS00300
BPHYT_RS00305: BPHYT_RS00305 - ABC transporter substrate-binding protein, at 75,327 to 76,892
_RS00305
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 73.697 kb on - strand, within BPHYT_RS00290 at 73.819 kb on + strand, within BPHYT_RS00290 at 73.820 kb on - strand, within BPHYT_RS00290 at 73.820 kb on - strand, within BPHYT_RS00290 at 74.063 kb on - strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.093 kb on - strand at 74.259 kb on + strand, within BPHYT_RS00295 at 74.259 kb on + strand, within BPHYT_RS00295 at 74.260 kb on - strand, within BPHYT_RS00295 at 74.260 kb on - strand, within BPHYT_RS00295 at 74.664 kb on - strand at 74.963 kb on + strand, within BPHYT_RS00300 at 74.974 kb on + strand, within BPHYT_RS00300 at 74.975 kb on - strand, within BPHYT_RS00300 at 75.344 kb on - strand at 75.421 kb on + strand at 75.422 kb on - strand at 75.422 kb on - strand at 75.422 kb on - strand at 75.425 kb on - strand at 75.624 kb on + strand, within BPHYT_RS00305 at 75.624 kb on + strand, within BPHYT_RS00305 at 75.654 kb on + strand, within BPHYT_RS00305 at 75.778 kb on - strand, within BPHYT_RS00305 at 75.778 kb on - strand, within BPHYT_RS00305 at 75.778 kb on - strand, within BPHYT_RS00305 at 75.779 kb on + strand, within BPHYT_RS00305 at 75.780 kb on - strand, within BPHYT_RS00305 at 75.780 kb on - strand, within BPHYT_RS00305 at 75.952 kb on - strand, within BPHYT_RS00305 at 76.126 kb on - strand, within BPHYT_RS00305 at 76.134 kb on + strand, within BPHYT_RS00305 at 76.135 kb on - strand, within BPHYT_RS00305
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 73,697 - BPHYT_RS00290 0.56 +0.3 73,819 + BPHYT_RS00290 0.70 +0.1 73,820 - BPHYT_RS00290 0.70 +0.4 73,820 - BPHYT_RS00290 0.70 -2.0 74,063 - +0.8 74,072 + -0.7 74,072 + +0.2 74,072 + +0.3 74,072 + +0.5 74,072 + +0.8 74,073 - +0.0 74,073 - -0.2 74,073 - -1.7 74,073 - +1.2 74,093 - -0.6 74,259 + BPHYT_RS00295 0.44 -1.5 74,259 + BPHYT_RS00295 0.44 -0.2 74,260 - BPHYT_RS00295 0.44 +1.8 74,260 - BPHYT_RS00295 0.44 -1.2 74,664 - -0.3 74,963 + BPHYT_RS00300 0.50 -0.1 74,974 + BPHYT_RS00300 0.52 +0.6 74,975 - BPHYT_RS00300 0.52 -0.9 75,344 - -0.6 75,421 + -0.2 75,422 - +0.6 75,422 - +0.3 75,422 - +1.4 75,425 - -1.9 75,624 + BPHYT_RS00305 0.19 -1.4 75,624 + BPHYT_RS00305 0.19 -2.2 75,654 + BPHYT_RS00305 0.21 +2.3 75,778 - BPHYT_RS00305 0.29 +0.7 75,778 - BPHYT_RS00305 0.29 -0.9 75,778 - BPHYT_RS00305 0.29 -1.7 75,779 + BPHYT_RS00305 0.29 +0.2 75,780 - BPHYT_RS00305 0.29 +0.2 75,780 - BPHYT_RS00305 0.29 -3.3 75,952 - BPHYT_RS00305 0.40 -1.0 76,126 - BPHYT_RS00305 0.51 -0.6 76,134 + BPHYT_RS00305 0.52 +0.1 76,135 - BPHYT_RS00305 0.52 -0.3
Or see this region's nucleotide sequence