Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00270

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
68,532	+		BPHYT_RS00265	0.47	-0.8
68,533	-		BPHYT_RS00265	0.47	+1.1
68,798	-		BPHYT_RS00265	0.62	-1.9
69,074	+		BPHYT_RS00265	0.77	-1.2
69,075	-		BPHYT_RS00265	0.77	+0.5
69,202	+		BPHYT_RS00265	0.84	-1.3
69,203	-		BPHYT_RS00265	0.84	-3.0
69,286	+		BPHYT_RS00265	0.89	+0.8
69,315	-				+1.8
69,315	-				-0.1
69,453	+				-2.4
69,453	+				-0.6
69,454	-				-1.3
69,455	+				+0.7
69,456	-				+0.1
69,525	-				-0.9
69,732	-		BPHYT_RS00270	0.35	+0.2
69,732	-		BPHYT_RS00270	0.35	-0.2
70,094	+		BPHYT_RS00270	0.87	-1.2
70,095	-		BPHYT_RS00270	0.87	+0.2
70,306	+		BPHYT_RS00275	0.12	+0.3
70,307	-		BPHYT_RS00275	0.12	-0.3
70,460	-		BPHYT_RS00275	0.34	-0.3
70,460	-		BPHYT_RS00275	0.34	-0.9
70,460	-		BPHYT_RS00275	0.34	+0.2
70,607	+		BPHYT_RS00275	0.56	-0.4
70,608	-		BPHYT_RS00275	0.56	-1.7
70,683	-		BPHYT_RS00275	0.67	+1.1
70,772	+		BPHYT_RS00275	0.80	-1.0
70,772	+		BPHYT_RS00275	0.80	+1.2
70,772	+		BPHYT_RS00275	0.80	-0.0
70,773	-		BPHYT_RS00275	0.80	+1.1
70,908	+				+1.0
70,908	+				+0.3
70,909	-				-0.3
70,909	-				+0.8
70,909	-				-1.0
70,909	-				+0.1
70,941	-				-0.2