Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00260

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00255 and BPHYT_RS00260 are separated by 80 nucleotidesBPHYT_RS00260 and BPHYT_RS00265 overlap by 8 nucleotides BPHYT_RS00255: BPHYT_RS00255 - amino acid ABC transporter, at 65,601 to 66,764 _RS00255 BPHYT_RS00260: BPHYT_RS00260 - amino acid ABC transporter, at 66,845 to 67,681 _RS00260 BPHYT_RS00265: BPHYT_RS00265 - branched-chain amino acid ABC transporter substrate-binding protein, at 67,674 to 69,488 _RS00265 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.862 kb on + strand, within BPHYT_RS00255at 65.863 kb on - strand, within BPHYT_RS00255at 65.969 kb on + strand, within BPHYT_RS00255at 65.970 kb on - strand, within BPHYT_RS00255at 66.009 kb on + strand, within BPHYT_RS00255at 66.009 kb on + strand, within BPHYT_RS00255at 66.009 kb on + strand, within BPHYT_RS00255at 66.010 kb on - strand, within BPHYT_RS00255at 66.010 kb on - strand, within BPHYT_RS00255at 66.010 kb on - strandat 66.010 kb on - strand, within BPHYT_RS00255at 66.010 kb on - strand, within BPHYT_RS00255at 66.015 kb on + strand, within BPHYT_RS00255at 66.015 kb on + strand, within BPHYT_RS00255at 66.015 kb on + strandat 66.015 kb on + strand, within BPHYT_RS00255at 66.016 kb on - strand, within BPHYT_RS00255at 66.016 kb on - strand, within BPHYT_RS00255at 66.016 kb on - strand, within BPHYT_RS00255at 66.016 kb on - strand, within BPHYT_RS00255at 66.017 kb on + strand, within BPHYT_RS00255at 66.017 kb on + strand, within BPHYT_RS00255at 66.018 kb on - strand, within BPHYT_RS00255at 66.064 kb on - strand, within BPHYT_RS00255at 66.064 kb on - strand, within BPHYT_RS00255at 66.153 kb on + strand, within BPHYT_RS00255at 66.153 kb on + strand, within BPHYT_RS00255at 66.193 kb on - strand, within BPHYT_RS00255at 66.403 kb on - strand, within BPHYT_RS00255at 66.420 kb on + strand, within BPHYT_RS00255at 66.420 kb on + strand, within BPHYT_RS00255at 66.421 kb on - strand, within BPHYT_RS00255at 66.522 kb on + strand, within BPHYT_RS00255at 66.522 kb on + strand, within BPHYT_RS00255at 66.672 kb on + strandat 66.686 kb on - strandat 66.842 kb on + strandat 66.842 kb on + strandat 66.843 kb on - strandat 66.843 kb on - strandat 66.843 kb on - strandat 66.843 kb on - strandat 66.844 kb on + strandat 66.845 kb on - strandat 66.927 kb on + strandat 66.928 kb on - strandat 66.994 kb on + strand, within BPHYT_RS00260at 66.995 kb on - strand, within BPHYT_RS00260at 67.094 kb on + strand, within BPHYT_RS00260at 67.236 kb on - strand, within BPHYT_RS00260at 67.236 kb on - strand, within BPHYT_RS00260at 67.260 kb on + strand, within BPHYT_RS00260at 67.261 kb on - strand, within BPHYT_RS00260at 67.592 kb on + strand, within BPHYT_RS00260at 67.594 kb on + strand, within BPHYT_RS00260at 67.851 kb on + strandat 67.851 kb on + strandat 67.854 kb on - strandat 67.854 kb on - strandat 67.854 kb on - strandat 67.854 kb on - strandat 67.902 kb on + strand, within BPHYT_RS00265at 67.904 kb on + strand, within BPHYT_RS00265at 67.918 kb on + strand, within BPHYT_RS00265at 67.918 kb on + strand, within BPHYT_RS00265at 67.919 kb on - strand, within BPHYT_RS00265at 67.923 kb on - strand, within BPHYT_RS00265at 68.058 kb on - strand, within BPHYT_RS00265at 68.286 kb on + strand, within BPHYT_RS00265at 68.367 kb on + strand, within BPHYT_RS00265at 68.377 kb on - strand, within BPHYT_RS00265at 68.413 kb on + strand, within BPHYT_RS00265at 68.532 kb on + strand, within BPHYT_RS00265at 68.533 kb on - strand, within BPHYT_RS00265

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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65,862 + BPHYT_RS00255 0.22 -0.1
65,863 - BPHYT_RS00255 0.23 +0.3
65,969 + BPHYT_RS00255 0.32 +0.0
65,970 - BPHYT_RS00255 0.32 +0.2
66,009 + BPHYT_RS00255 0.35 +0.8
66,009 + BPHYT_RS00255 0.35 -1.4
66,009 + BPHYT_RS00255 0.35 -0.8
66,010 - BPHYT_RS00255 0.35 -0.8
66,010 - BPHYT_RS00255 0.35 +0.4
66,010 - -0.5
66,010 - BPHYT_RS00255 0.35 +0.1
66,010 - BPHYT_RS00255 0.35 +0.8
66,015 + BPHYT_RS00255 0.36 +0.6
66,015 + BPHYT_RS00255 0.36 -0.4
66,015 + +1.4
66,015 + BPHYT_RS00255 0.36 -0.2
66,016 - BPHYT_RS00255 0.36 -0.4
66,016 - BPHYT_RS00255 0.36 +0.2
66,016 - BPHYT_RS00255 0.36 +1.8
66,016 - BPHYT_RS00255 0.36 -0.1
66,017 + BPHYT_RS00255 0.36 -0.2
66,017 + BPHYT_RS00255 0.36 +0.1
66,018 - BPHYT_RS00255 0.36 +0.8
66,064 - BPHYT_RS00255 0.40 -1.2
66,064 - BPHYT_RS00255 0.40 -0.2
66,153 + BPHYT_RS00255 0.47 -1.2
66,153 + BPHYT_RS00255 0.47 +0.4
66,193 - BPHYT_RS00255 0.51 -0.2
66,403 - BPHYT_RS00255 0.69 -1.0
66,420 + BPHYT_RS00255 0.70 -0.0
66,420 + BPHYT_RS00255 0.70 +1.5
66,421 - BPHYT_RS00255 0.70 +0.5
66,522 + BPHYT_RS00255 0.79 -0.4
66,522 + BPHYT_RS00255 0.79 -1.2
66,672 + -0.4
66,686 - +1.1
66,842 + -0.3
66,842 + +1.1
66,843 - +1.3
66,843 - -2.0
66,843 - +1.4
66,843 - +0.5
66,844 + +1.3
66,845 - +0.5
66,927 + -0.2
66,928 - +0.1
66,994 + BPHYT_RS00260 0.18 +0.3
66,995 - BPHYT_RS00260 0.18 -0.9
67,094 + BPHYT_RS00260 0.30 -0.4
67,236 - BPHYT_RS00260 0.47 -0.1
67,236 - BPHYT_RS00260 0.47 +0.8
67,260 + BPHYT_RS00260 0.50 +1.0
67,261 - BPHYT_RS00260 0.50 -0.2
67,592 + BPHYT_RS00260 0.89 -0.5
67,594 + BPHYT_RS00260 0.89 +0.8
67,851 + +0.1
67,851 + +0.6
67,854 - -0.6
67,854 - -0.2
67,854 - +0.9
67,854 - +0.2
67,902 + BPHYT_RS00265 0.13 -2.0
67,904 + BPHYT_RS00265 0.13 -1.0
67,918 + BPHYT_RS00265 0.13 -1.9
67,918 + BPHYT_RS00265 0.13 -1.5
67,919 - BPHYT_RS00265 0.13 -0.8
67,923 - BPHYT_RS00265 0.14 -0.4
68,058 - BPHYT_RS00265 0.21 -0.2
68,286 + BPHYT_RS00265 0.34 -2.3
68,367 + BPHYT_RS00265 0.38 +0.4
68,377 - BPHYT_RS00265 0.39 +2.1
68,413 + BPHYT_RS00265 0.41 -1.4
68,532 + BPHYT_RS00265 0.47 -0.8
68,533 - BPHYT_RS00265 0.47 +1.1

Or see this region's nucleotide sequence