Experiment: Stool_Day5_Mouse12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0606 and BT0607 are separated by 6 nucleotides BT0607 and BT0608 are separated by 96 nucleotides BT0608 and BT0609 are separated by 531 nucleotides
BT0606: BT0606 - hypothetical protein (NCBI ptt file), at 748,120 to 749,340
BT0606
BT0607: BT0607 - serine O-acetyltransferase (NCBI ptt file), at 749,347 to 749,922
BT0607
BT0608: BT0608 - glycosyltransferase (NCBI ptt file), at 750,019 to 751,098
BT0608
BT0609: BT0609 - glycosyltransferase (NCBI ptt file), at 751,630 to 752,769
BT0609
Position (kb) 750
751
752 Strain fitness (log2 ratio) -2
-1
0
1
2 at 749.037 kb on + strand, within BT0606 at 749.038 kb on - strand, within BT0606 at 749.089 kb on + strand, within BT0606 at 749.090 kb on - strand, within BT0606 at 749.193 kb on - strand, within BT0606 at 749.236 kb on - strand at 749.286 kb on - strand at 749.302 kb on - strand at 749.407 kb on - strand, within BT0607 at 749.604 kb on + strand, within BT0607 at 749.605 kb on - strand, within BT0607 at 749.711 kb on + strand, within BT0607 at 749.712 kb on - strand, within BT0607 at 749.775 kb on - strand, within BT0607 at 749.789 kb on + strand, within BT0607 at 749.789 kb on + strand, within BT0607 at 749.807 kb on + strand, within BT0607 at 749.811 kb on + strand, within BT0607 at 749.820 kb on + strand, within BT0607 at 750.039 kb on + strand at 750.040 kb on - strand at 750.040 kb on - strand at 750.041 kb on + strand at 750.041 kb on + strand at 750.141 kb on + strand, within BT0608 at 750.201 kb on - strand, within BT0608 at 750.209 kb on + strand, within BT0608 at 750.268 kb on + strand, within BT0608 at 750.307 kb on + strand, within BT0608 at 750.316 kb on - strand, within BT0608 at 750.324 kb on + strand, within BT0608 at 750.325 kb on - strand at 750.423 kb on - strand, within BT0608 at 750.434 kb on + strand, within BT0608 at 750.434 kb on + strand, within BT0608 at 750.467 kb on + strand, within BT0608 at 750.511 kb on - strand, within BT0608 at 750.553 kb on - strand, within BT0608 at 750.738 kb on - strand, within BT0608 at 750.738 kb on - strand, within BT0608 at 750.769 kb on - strand, within BT0608 at 750.837 kb on + strand, within BT0608 at 750.870 kb on + strand, within BT0608 at 751.081 kb on - strand at 751.150 kb on - strand at 751.299 kb on - strand at 751.442 kb on - strand at 751.442 kb on - strand at 751.588 kb on + strand at 751.621 kb on + strand at 751.673 kb on - strand at 751.767 kb on - strand, within BT0609 at 751.841 kb on - strand, within BT0609 at 751.847 kb on - strand, within BT0609 at 751.881 kb on + strand, within BT0609 at 751.955 kb on + strand, within BT0609 at 751.995 kb on + strand, within BT0609 at 752.065 kb on - strand, within BT0609 at 752.083 kb on - strand, within BT0609
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day5_Mouse12 remove 749,037 + BT0606 0.75 +2.1 749,038 - BT0606 0.75 -0.3 749,089 + BT0606 0.79 -2.4 749,090 - BT0606 0.79 +1.1 749,193 - BT0606 0.88 +2.1 749,236 - +1.1 749,286 - +0.7 749,302 - +2.1 749,407 - BT0607 0.10 -0.2 749,604 + BT0607 0.45 -1.3 749,605 - BT0607 0.45 -0.9 749,711 + BT0607 0.63 +2.1 749,712 - BT0607 0.63 -0.5 749,775 - BT0607 0.74 -0.3 749,789 + BT0607 0.77 +1.1 749,789 + BT0607 0.77 -0.9 749,807 + BT0607 0.80 +0.1 749,811 + BT0607 0.81 +0.1 749,820 + BT0607 0.82 -0.3 750,039 + +1.1 750,040 - +1.1 750,040 - +0.1 750,041 + -1.3 750,041 + +1.5 750,141 + BT0608 0.11 +2.1 750,201 - BT0608 0.17 +0.7 750,209 + BT0608 0.18 -1.3 750,268 + BT0608 0.23 -0.3 750,307 + BT0608 0.27 +0.7 750,316 - BT0608 0.28 +0.5 750,324 + BT0608 0.28 -0.9 750,325 - -0.5 750,423 - BT0608 0.37 +0.1 750,434 + BT0608 0.38 +1.1 750,434 + BT0608 0.38 +1.1 750,467 + BT0608 0.41 +0.7 750,511 - BT0608 0.46 +2.1 750,553 - BT0608 0.49 -1.9 750,738 - BT0608 0.67 +1.1 750,738 - BT0608 0.67 -1.8 750,769 - BT0608 0.69 +1.1 750,837 + BT0608 0.76 -0.5 750,870 + BT0608 0.79 -0.3 751,081 - -0.6 751,150 - +1.1 751,299 - -0.9 751,442 - -0.3 751,442 - +0.5 751,588 + +0.1 751,621 + -0.5 751,673 - -0.3 751,767 - BT0609 0.12 +0.1 751,841 - BT0609 0.19 +0.7 751,847 - BT0609 0.19 -0.7 751,881 + BT0609 0.22 -0.3 751,955 + BT0609 0.29 +0.1 751,995 + BT0609 0.32 +0.1 752,065 - BT0609 0.38 -1.7 752,083 - BT0609 0.40 -0.7
Or see this region's nucleotide sequence