Experiment: Stool_Day5_Mouse11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0666 and BT0667 are separated by 12 nucleotides BT0667 and BT0668 are separated by 1 nucleotides BT0668 and BT0669 are separated by 131 nucleotides
BT0666: BT0666 - hypothetical protein (NCBI ptt file), at 820,535 to 821,680
BT0666
BT0667: BT0667 - signal peptidase I (SPase I) (NCBI ptt file), at 821,693 to 822,415
BT0667
BT0668: BT0668 - hypothetical protein (NCBI ptt file), at 822,417 to 824,366
BT0668
BT0669: BT0669 - putative cation efflux system protein (NCBI ptt file), at 824,498 to 825,586
BT0669
Position (kb) 822
823
824
825 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 821.524 kb on + strand, within BT0666 at 821.525 kb on - strand, within BT0666 at 821.546 kb on - strand, within BT0666 at 821.602 kb on - strand at 821.645 kb on - strand at 821.685 kb on - strand at 821.792 kb on - strand, within BT0667 at 821.842 kb on - strand, within BT0667 at 822.055 kb on - strand, within BT0667 at 822.057 kb on - strand, within BT0667 at 822.057 kb on - strand, within BT0667 at 822.113 kb on - strand, within BT0667 at 822.131 kb on - strand, within BT0667 at 822.134 kb on - strand, within BT0667 at 822.138 kb on - strand, within BT0667 at 822.190 kb on - strand, within BT0667 at 822.507 kb on + strand at 822.633 kb on + strand, within BT0668 at 822.690 kb on - strand, within BT0668 at 822.758 kb on - strand, within BT0668 at 822.762 kb on - strand, within BT0668 at 822.970 kb on - strand, within BT0668 at 823.081 kb on - strand, within BT0668 at 823.110 kb on + strand, within BT0668 at 823.110 kb on + strand, within BT0668 at 823.116 kb on - strand, within BT0668 at 823.116 kb on - strand, within BT0668 at 823.184 kb on + strand, within BT0668 at 823.188 kb on - strand, within BT0668 at 823.298 kb on + strand, within BT0668 at 823.298 kb on + strand, within BT0668 at 823.340 kb on + strand, within BT0668 at 823.345 kb on + strand, within BT0668 at 823.354 kb on + strand, within BT0668 at 823.360 kb on + strand, within BT0668 at 823.388 kb on - strand, within BT0668 at 823.388 kb on - strand, within BT0668 at 823.499 kb on - strand, within BT0668 at 823.554 kb on - strand, within BT0668 at 823.560 kb on + strand, within BT0668 at 823.721 kb on - strand, within BT0668 at 823.723 kb on - strand, within BT0668 at 823.723 kb on - strand, within BT0668 at 823.764 kb on - strand, within BT0668 at 823.791 kb on + strand, within BT0668 at 823.792 kb on - strand, within BT0668 at 823.821 kb on + strand, within BT0668 at 823.863 kb on + strand, within BT0668 at 823.920 kb on + strand, within BT0668 at 823.921 kb on - strand, within BT0668 at 823.921 kb on - strand, within BT0668 at 824.001 kb on - strand, within BT0668 at 824.093 kb on - strand, within BT0668 at 824.121 kb on + strand, within BT0668 at 824.222 kb on + strand at 824.223 kb on - strand at 824.449 kb on - strand at 824.474 kb on - strand at 824.540 kb on - strand at 824.747 kb on - strand, within BT0669 at 824.827 kb on - strand, within BT0669 at 824.847 kb on + strand, within BT0669 at 824.949 kb on + strand, within BT0669 at 825.014 kb on - strand, within BT0669 at 825.014 kb on - strand, within BT0669 at 825.080 kb on - strand, within BT0669 at 825.098 kb on - strand, within BT0669 at 825.098 kb on - strand, within BT0669 at 825.101 kb on - strand, within BT0669 at 825.175 kb on + strand, within BT0669 at 825.195 kb on - strand, within BT0669 at 825.225 kb on + strand, within BT0669
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day5_Mouse11 remove 821,524 + BT0666 0.86 +0.8 821,525 - BT0666 0.86 -0.8 821,546 - BT0666 0.88 -0.2 821,602 - -0.9 821,645 - -1.5 821,685 - -2.5 821,792 - BT0667 0.14 -0.9 821,842 - BT0667 0.21 -3.6 822,055 - BT0667 0.50 +0.8 822,057 - BT0667 0.50 +1.1 822,057 - BT0667 0.50 -2.3 822,113 - BT0667 0.58 +0.2 822,131 - BT0667 0.61 +0.8 822,134 - BT0667 0.61 -2.2 822,138 - BT0667 0.62 +2.3 822,190 - BT0667 0.69 -1.0 822,507 + +0.8 822,633 + BT0668 0.11 +0.2 822,690 - BT0668 0.14 -0.8 822,758 - BT0668 0.17 -1.0 822,762 - BT0668 0.18 +0.4 822,970 - BT0668 0.28 +2.4 823,081 - BT0668 0.34 -2.2 823,110 + BT0668 0.36 -0.8 823,110 + BT0668 0.36 +0.8 823,116 - BT0668 0.36 +0.9 823,116 - BT0668 0.36 -1.5 823,184 + BT0668 0.39 -0.2 823,188 - BT0668 0.40 -2.6 823,298 + BT0668 0.45 -0.2 823,298 + BT0668 0.45 -0.3 823,340 + BT0668 0.47 +0.8 823,345 + BT0668 0.48 +0.6 823,354 + BT0668 0.48 +0.5 823,360 + BT0668 0.48 -0.2 823,388 - BT0668 0.50 -0.8 823,388 - BT0668 0.50 -0.8 823,499 - BT0668 0.55 -0.2 823,554 - BT0668 0.58 +0.1 823,560 + BT0668 0.59 -0.2 823,721 - BT0668 0.67 -1.5 823,723 - BT0668 0.67 -0.2 823,723 - BT0668 0.67 -1.2 823,764 - BT0668 0.69 +0.6 823,791 + BT0668 0.70 +0.8 823,792 - BT0668 0.71 -2.3 823,821 + BT0668 0.72 -0.2 823,863 + BT0668 0.74 +0.1 823,920 + BT0668 0.77 -0.2 823,921 - BT0668 0.77 -0.2 823,921 - BT0668 0.77 -1.2 824,001 - BT0668 0.81 -0.2 824,093 - BT0668 0.86 -0.2 824,121 + BT0668 0.87 +0.8 824,222 + -1.3 824,223 - +0.8 824,449 - +0.4 824,474 - -0.3 824,540 - -1.2 824,747 - BT0669 0.23 -0.7 824,827 - BT0669 0.30 -1.2 824,847 + BT0669 0.32 -0.7 824,949 + BT0669 0.41 -1.3 825,014 - BT0669 0.47 +0.8 825,014 - BT0669 0.47 +0.8 825,080 - BT0669 0.53 -2.0 825,098 - BT0669 0.55 +1.4 825,098 - BT0669 0.55 -0.2 825,101 - BT0669 0.55 +1.8 825,175 + BT0669 0.62 -0.2 825,195 - BT0669 0.64 +0.8 825,225 + BT0669 0.67 -1.7
Or see this region's nucleotide sequence