Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_29

Experiment: Stool_Day5_Mouse7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day5_Mouse7
23,405	+				-1.2
23,405	+				-3.0
23,412	-				+0.4
23,419	-				+0.4
23,433	-				+0.4
23,466	+		p5482_28	0.12	-2.5
23,474	+		p5482_28	0.12	+0.4
23,475	-		p5482_28	0.13	-0.6
23,479	+		p5482_28	0.13	-0.6
23,480	-		p5482_28	0.13	-1.9
23,480	-		p5482_28	0.13	-1.6
23,511	-		p5482_28	0.16	+0.3
23,568	-		p5482_28	0.22	+1.0
23,568	-		p5482_28	0.22	-1.5
23,568	-		p5482_28	0.22	-0.2
23,568	-		p5482_28	0.22	-1.1
23,573	-		p5482_28	0.23	-0.8
23,603	+		p5482_28	0.26	-0.2
23,604	-		p5482_28	0.26	-0.5
23,604	-		p5482_28	0.26	-1.4
23,678	-		p5482_28	0.34	-0.9
23,716	+		p5482_28	0.37	-0.8
23,717	-		p5482_28	0.38	-0.6
23,717	-		p5482_28	0.38	-0.1
23,806	-		p5482_28	0.47	-1.6
23,806	-		p5482_28	0.47	-0.6
23,806	-		p5482_28	0.47	-3.4
23,806	-		p5482_28	0.47	-1.4
23,806	-		p5482_28	0.47	-1.1
23,806	-		p5482_28	0.47	-0.6
23,806	-		p5482_28	0.47	-0.6
23,807	+		p5482_28	0.47	-1.2
23,808	-		p5482_28	0.47	-1.6
23,808	-		p5482_28	0.47	-0.7
23,852	+		p5482_28	0.51	+2.0
23,852	+		p5482_28	0.51	+0.4
23,853	-		p5482_28	0.52	-0.2
23,856	-		p5482_28	0.52	-2.3
23,856	-		p5482_28	0.52	+0.4
23,862	-		p5482_28	0.53	-0.0
23,862	-		p5482_28	0.53	-1.2
23,879	+		p5482_28	0.54	-0.9
23,888	-		p5482_28	0.55	-1.1
23,888	-		p5482_28	0.55	-0.6
23,888	-		p5482_28	0.55	+0.4
23,894	-		p5482_28	0.56	-2.4
23,894	-		p5482_28	0.56	-1.9
23,894	-		p5482_28	0.56	-1.1
23,894	-		p5482_28	0.56	-0.6
23,894	-		p5482_28	0.56	-0.4
23,894	-		p5482_28	0.56	-0.9
23,971	-		p5482_28	0.64	-0.6
23,971	-		p5482_28	0.64	-1.4
24,048	+		p5482_28	0.72	-2.1
24,048	+		p5482_28	0.72	-2.8
24,049	-		p5482_28	0.72	-3.4
24,049	-		p5482_28	0.72	-3.2
24,051	-		p5482_28	0.72	-2.0
24,051	-		p5482_28	0.72	+0.4
24,061	+		p5482_28	0.73	-2.9
24,062	-		p5482_28	0.73	-1.0
24,063	+		p5482_28	0.73	-1.3
24,064	-		p5482_28	0.73	+0.4
24,064	-		p5482_28	0.73	-2.6
24,113	-		p5482_28	0.78	-1.5
24,113	-		p5482_28	0.78	-0.8
24,139	+		p5482_28	0.81	-1.2
24,143	+		p5482_28	0.82	-0.6
24,143	+		p5482_28	0.82	-1.9
24,196	-		p5482_28	0.87	-2.2
24,229	+				-0.6
24,229	+				-0.9
24,230	-				-0.2
24,230	-				+1.4
24,236	+				-0.6
24,311	+				-2.0
24,312	-				-1.4
24,312	-				-0.5
24,312	-				-0.4
24,312	-				-0.2
24,312	-				-0.3
24,376	+				-1.4
24,381	+				-0.7
24,381	+				+0.4
24,382	-				+2.0
24,382	-				-0.8
24,405	+				+1.0
24,405	+				-3.1
24,405	+				-0.6
24,408	+				+0.4
24,409	-				+2.0
24,409	-				-0.6
24,476	-				-2.0
24,483	+		p5482_29	0.11	-2.3
24,484	-		p5482_29	0.11	-2.1
24,487	+		p5482_29	0.11	-1.1
24,487	+		p5482_29	0.11	+0.0
24,487	+		p5482_29	0.11	-0.9
24,487	+		p5482_29	0.11	-0.6
24,488	-		p5482_29	0.11	-0.2
24,488	-		p5482_29	0.11	-0.0
24,508	+		p5482_29	0.13	-1.4
24,514	+		p5482_29	0.13	+0.8
24,514	+		p5482_29	0.13	+0.6
24,515	-		p5482_29	0.13	-0.0
24,517	+		p5482_29	0.14	-0.7
24,518	-		p5482_29	0.14	-1.2
24,575	-		p5482_29	0.19	-1.2
24,575	-		p5482_29	0.19	-2.4
24,575	-		p5482_29	0.19	-1.8
24,653	+		p5482_29	0.26	-1.6
24,653	+		p5482_29	0.26	-0.3
24,654	-		p5482_29	0.26	-2.4
24,704	+		p5482_29	0.30	-0.7
24,728	-		p5482_29	0.32	-1.3
24,749	+		p5482_29	0.34	-0.9
24,749	+		p5482_29	0.34	-0.1
24,750	-		p5482_29	0.34	-1.9
24,751	+		p5482_29	0.34	+0.2
24,751	+		p5482_29	0.34	-0.9
24,783	+		p5482_29	0.37	-0.9
24,784	-		p5482_29	0.37	-0.1
24,784	-		p5482_29	0.37	-1.6
24,788	+		p5482_29	0.38	-2.4
24,788	+		p5482_29	0.38	-0.8
24,789	-		p5482_29	0.38	-1.6
24,789	-		p5482_29	0.38	-1.2
24,789	-		p5482_29	0.38	-1.2
24,789	-		p5482_29	0.38	-0.2
24,790	+		p5482_29	0.38	-0.2
24,790	+		p5482_29	0.38	-0.6
24,790	+		p5482_29	0.38	+0.4
24,790	+		p5482_29	0.38	-0.3
24,791	-		p5482_29	0.38	+0.6
24,791	-		p5482_29	0.38	-0.0
24,806	+		p5482_29	0.39	+0.4
24,818	-		p5482_29	0.40	-1.4
24,820	+		p5482_29	0.41	-1.7
24,820	+		p5482_29	0.41	-0.4
24,820	+		p5482_29	0.41	+1.4
24,821	-		p5482_29	0.41	+1.6
24,821	-		p5482_29	0.41	-1.1
24,833	+		p5482_29	0.42	+2.0
24,834	-		p5482_29	0.42	-1.6
24,845	+		p5482_29	0.43	+0.4
24,845	+		p5482_29	0.43	+0.4
24,845	+		p5482_29	0.43	-0.3
24,845	+		p5482_29	0.43	-1.0
24,846	-		p5482_29	0.43	-1.7
24,846	-		p5482_29	0.43	-0.6
24,846	-		p5482_29	0.43	-0.6
24,846	-		p5482_29	0.43	-1.6
24,846	-		p5482_29	0.43	-1.3
24,898	+		p5482_29	0.48	+0.1
24,910	+		p5482_29	0.49	+1.0
24,911	-		p5482_29	0.49	-0.6
24,911	-		p5482_29	0.49	-2.4
24,911	-		p5482_29	0.49	-0.8
24,928	-		p5482_29	0.50	-1.7
24,928	-		p5482_29	0.50	+0.0
24,948	-		p5482_29	0.52	+0.4
24,948	-		p5482_29	0.52	-1.1
24,952	+		p5482_29	0.52	-1.6
25,081	+		p5482_29	0.64	-0.8
25,081	+		p5482_29	0.64	+0.4
25,081	+		p5482_29	0.64	+0.0
25,082	-		p5482_29	0.64	-0.5
25,114	+		p5482_29	0.67	-1.1
25,114	+				-1.6
25,114	+		p5482_29	0.67	-2.4
25,115	-		p5482_29	0.67	-2.4
25,115	-		p5482_29	0.67	-0.2
25,115	-		p5482_29	0.67	-0.7
25,129	+		p5482_29	0.68	+0.2
25,136	-		p5482_29	0.69	-0.0
25,138	+		p5482_29	0.69	+0.0
25,139	-		p5482_29	0.69	-1.5
25,139	-		p5482_29	0.69	-0.6
25,139	-		p5482_29	0.69	-2.0
25,139	-		p5482_29	0.69	-1.0
25,139	-		p5482_29	0.69	-0.2
25,147	+		p5482_29	0.70	+0.4
25,147	+		p5482_29	0.70	+0.1
25,147	+		p5482_29	0.70	+1.0
25,147	+		p5482_29	0.70	-2.4
25,148	-		p5482_29	0.70	-2.4
25,148	-		p5482_29	0.70	-0.7
25,148	-		p5482_29	0.70	+0.1
25,148	-		p5482_29	0.70	+0.1
25,148	-		p5482_29	0.70	-1.4
25,148	-		p5482_29	0.70	-1.5
25,154	-		p5482_29	0.70	-0.6
25,162	+		p5482_29	0.71	-0.2
25,163	-		p5482_29	0.71	-1.2
25,163	-		p5482_29	0.71	-0.8
25,164	+		p5482_29	0.71	-1.7
25,164	+		p5482_29	0.71	-0.1
25,165	-		p5482_29	0.71	-0.6
25,165	-		p5482_29	0.71	-1.2
25,283	+		p5482_29	0.82	-1.3
25,283	+		p5482_29	0.82	-0.3
25,319	+		p5482_29	0.85	-1.2
25,319	+		p5482_29	0.85	+1.4
25,319	+		p5482_29	0.85	+0.9
25,320	-		p5482_29	0.85	-0.9
25,320	-		p5482_29	0.85	-0.7
25,360	+		p5482_29	0.89	+1.4
25,360	+		p5482_29	0.89	-0.9
25,361	-		p5482_29	0.89	-1.2
25,364	+		p5482_29	0.89	-1.3
25,364	+		p5482_29	0.89	-1.1
25,364	+		p5482_29	0.89	-1.2
25,365	-		p5482_29	0.89	+0.4
25,388	+				-1.6
25,388	+				-2.2
25,388	+				+2.2
25,388	+				+1.1
25,463	-				-0.6
25,463	-				-0.1
25,463	-				-0.7
25,470	+				+1.0
25,470	+				-0.8
25,500	+				-1.7
25,500	+				+0.4
25,500	+				-0.3
25,501	-				-0.8
25,501	-				-0.2
25,503	+				-0.4
25,503	+				-0.5
25,504	-				-0.7
25,504	-				+1.0
25,523	+				-1.5
25,523	+				-2.2
25,524	-				-1.7
25,529	+				-1.3
25,530	-				-0.6
25,530	-				-1.6
25,581	+				+0.1
25,583	+				-1.1
25,597	+				-0.9
25,597	+				-3.3
25,598	-				-1.0
25,598	-				+1.0
25,598	-				+0.4
25,598	-				-0.3
25,598	-				+0.4
25,615	-				+0.4
25,657	+				-0.8
25,657	+				-2.3
25,657	+				+0.9
25,658	-				-1.4
25,658	-				-0.2
25,658	-				-0.1
25,659	+				+0.3
25,659	+				-1.9
25,676	+				-2.5
25,676	+				-1.6
25,677	-				-1.8
25,677	-				-2.4
25,679	-				-0.4
25,679	-				-1.6
25,679	-				-1.2
25,933	-				+0.5
25,933	-				-0.6
25,939	-				-0.9
25,944	-				+0.4
25,944	-				+0.4
25,968	-				-0.6
26,211	-		p5482_31	0.36	-1.2