Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3424

Experiment: Stool_Day5_Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day5_Mouse1
4,411,657	+				-0.0
4,411,672	+				-2.4
4,411,691	+				-0.0
4,411,701	-				-0.8
4,411,741	-				-0.3
4,411,747	+				+1.0
4,411,753	-				-1.0
4,411,779	+				-0.6
4,411,837	-				-2.3
4,411,860	+		BT3423	0.13	-0.6
4,411,881	+		BT3423	0.16	-0.0
4,411,886	+		BT3423	0.17	+1.0
4,411,887	-		BT3423	0.17	-1.6
4,411,932	+		BT3423	0.23	-1.8
4,411,991	-		BT3423	0.32	-0.0
4,411,998	+		BT3423	0.33	-0.6
4,412,025	-		BT3423	0.37	+1.0
4,412,083	-		BT3423	0.45	-0.6
4,412,159	-		BT3423	0.56	-0.0
4,412,196	+		BT3423	0.61	-0.5
4,412,196	+		BT3423	0.61	+1.0
4,412,238	+		BT3423	0.67	-0.3
4,412,257	+		BT3423	0.70	-1.0
4,412,258	-		BT3423	0.70	-0.0
4,412,258	-		BT3423	0.70	-1.5
4,412,260	-		BT3423	0.71	-0.0
4,412,260	-		BT3423	0.71	-1.1
4,412,260	-		BT3423	0.71	-2.1
4,412,260	-		BT3423	0.71	-1.4
4,412,262	-		BT3423	0.71	-1.1
4,412,290	-		BT3423	0.75	+0.4
4,412,290	-		BT3423	0.75	+0.7
4,412,299	-		BT3423	0.76	-1.3
4,412,299	-		BT3423	0.76	-0.4
4,412,308	-		BT3423	0.77	-0.7
4,412,364	+		BT3423	0.86	+0.4
4,412,387	-		BT3423	0.89	-0.9
4,412,394	-				-0.6
4,412,400	+				-0.8
4,412,400	+				-0.2
4,412,433	+				-1.0
4,412,434	-				-0.0
4,412,464	+				+1.0
4,412,464	+				-0.6
4,412,477	-				-1.0
4,412,479	-				-1.0
4,412,501	-				+0.4
4,412,543	+				+1.0
4,412,584	+				-0.6
4,412,590	-				+0.3
4,412,610	-				-3.9
4,412,647	-				-0.0
4,412,650	-				+1.0
4,412,667	+				-1.0
4,412,671	+				+1.0
4,412,673	+				-2.2
4,412,735	+				-1.0
4,412,735	+				-0.6
4,412,735	+				-0.8
4,412,735	+				+0.4
4,412,736	-				-2.1
4,412,751	+				-2.0
4,412,751	+				-2.2
4,412,752	-				-1.5
4,412,782	-				-1.5
4,412,883	+				-2.7
4,412,909	+				+1.0
4,412,910	-				-0.0
4,412,910	-				-1.6
4,412,993	-		BT3424	0.13	+0.4
4,412,993	-		BT3424	0.13	-1.0
4,412,994	+		BT3424	0.13	+0.2
4,412,994	+		BT3424	0.13	-1.5
4,412,995	-		BT3424	0.13	-1.1
4,412,995	-		BT3424	0.13	-0.2
4,412,995	-		BT3424	0.13	-0.7
4,412,995	-		BT3424	0.13	+1.0
4,412,995	-		BT3424	0.13	+1.6
4,413,044	-		BT3424	0.14	-0.2
4,413,044	-		BT3424	0.14	-0.0
4,413,046	-		BT3424	0.14	+1.4
4,413,046	-		BT3424	0.14	+1.6
4,413,085	-		BT3424	0.16	-0.0
4,413,345	+		BT3424	0.25	-1.6
4,413,346	-		BT3424	0.25	+2.6
4,413,379	+		BT3424	0.27	-0.0
4,413,380	-		BT3424	0.27	-0.6
4,413,380	-		BT3424	0.27	+0.8
4,413,409	+		BT3424	0.28	+0.4
4,413,409	+		BT3424	0.28	-0.2
4,413,454	-		BT3424	0.29	-1.1
4,413,473	-		BT3424	0.30	-0.6
4,413,474	+		BT3424	0.30	+1.0
4,413,503	+		BT3424	0.31	+1.0
4,413,503	+		BT3424	0.31	-1.7
4,413,504	-		BT3424	0.31	-0.0
4,413,565	+				+1.0
4,413,634	-		BT3424	0.36	-1.3
4,413,642	+		BT3424	0.36	-1.3
4,413,719	+		BT3424	0.39	-1.7
4,413,720	-		BT3424	0.39	+1.0
4,413,732	-		BT3424	0.40	-0.0
4,413,783	-		BT3424	0.41	+0.4
4,413,841	-		BT3424	0.43	-0.6
4,413,898	+		BT3424	0.46	-0.5
4,413,980	-		BT3424	0.49	-0.0
4,414,216	-		BT3424	0.57	-2.1
4,414,216	-		BT3424	0.57	+0.3
4,414,220	+		BT3424	0.57	-0.0
4,414,254	+		BT3424	0.59	-1.6
4,414,300	-		BT3424	0.60	-0.2
4,414,341	+		BT3424	0.62	-0.3
4,414,361	-		BT3424	0.62	+0.5
4,414,397	+		BT3424	0.64	+1.2
4,414,470	-		BT3424	0.66	-2.0
4,414,510	-		BT3424	0.68	+0.2
4,414,523	+		BT3424	0.68	-2.2
4,414,546	+		BT3424	0.69	+1.6
4,414,547	-		BT3424	0.69	-2.2
4,414,549	-		BT3424	0.69	+0.4
4,414,593	-		BT3424	0.71	+0.3
4,414,633	-		BT3424	0.72	-0.6
4,414,649	+		BT3424	0.73	-0.8
4,414,728	+		BT3424	0.76	-1.3
4,414,747	+		BT3424	0.77	+0.4
4,414,750	-		BT3424	0.77	-0.8
4,414,768	+		BT3424	0.77	-0.8
4,414,769	-		BT3424	0.77	+2.0
4,414,774	+		BT3424	0.78	-0.0
4,414,775	-		BT3424	0.78	-1.1
4,414,778	-		BT3424	0.78	-1.6
4,414,779	+		BT3424	0.78	-1.8
4,414,820	+		BT3424	0.79	-1.0
4,414,851	+		BT3424	0.80	-2.0
4,414,852	-		BT3424	0.80	-0.6
4,414,852	-		BT3424	0.80	+0.8
4,414,852	-		BT3424	0.80	-0.0
4,414,866	-		BT3424	0.81	-0.5
4,414,947	+		BT3424	0.84	-0.0
4,414,947	+		BT3424	0.84	+0.3
4,414,950	+		BT3424	0.84	-2.0
4,414,984	+		BT3424	0.85	+0.6
4,414,988	+		BT3424	0.85	-0.6
4,414,996	+		BT3424	0.86	-0.6
4,415,030	+		BT3424	0.87	+0.1
4,415,033	+		BT3424	0.87	-0.7
4,415,072	+		BT3424	0.88	+1.0
4,415,073	-		BT3424	0.88	+0.2
4,415,079	+		BT3424	0.89	-2.3
4,415,079	+		BT3424	0.89	-0.8
4,415,080	-		BT3424	0.89	-0.1
4,415,182	+				-1.6
4,415,188	-				-2.0
4,415,247	+				-2.3
4,415,253	-				-0.6
4,415,308	-				+1.0
4,415,314	+				+0.4
4,415,316	+				-0.2
4,415,316	+				-0.8
4,415,324	+				-1.5
4,415,381	+				-2.5
4,415,425	+				-0.0
4,415,472	+				-0.0
4,415,479	+				-0.6
4,415,482	-				-0.0
4,415,492	-				-0.0
4,415,494	-				+1.0
4,415,494	-				+0.2
4,415,494	-				+1.0
4,415,496	-				+0.2
4,415,496	-				+1.0
4,415,496	-				-0.0
4,415,538	-				+0.3
4,415,557	-				+1.0
4,415,557	-				-0.9
4,415,557	-				-0.3
4,415,557	-				-0.6
4,415,597	+				-1.3
4,415,598	-				-0.7
4,415,598	-				-1.2
4,415,613	-		BT3425	0.11	-0.9
4,415,622	+		BT3425	0.11	-1.0
4,415,672	-		BT3425	0.14	-0.7
4,415,672	-		BT3425	0.14	+0.5
4,415,688	-		BT3425	0.15	+0.4
4,415,733	+		BT3425	0.18	+1.0
4,415,733	+		BT3425	0.18	-2.0
4,415,734	-		BT3425	0.18	-0.1
4,415,734	-		BT3425	0.18	-0.8
4,415,734	-		BT3425	0.18	-0.0
4,415,736	+		BT3425	0.18	+2.0
4,415,753	-		BT3425	0.19	-0.6
4,415,763	+		BT3425	0.20	-2.1
4,415,792	-		BT3425	0.22	-0.7
4,415,837	-		BT3425	0.25	-1.6
4,415,846	-		BT3425	0.25	-3.8
4,415,846	-		BT3425	0.25	-1.7
4,415,858	+		BT3425	0.26	+1.0
4,415,895	+		BT3425	0.28	+1.0
4,415,896	-		BT3425	0.28	-0.8
4,415,898	-		BT3425	0.28	+1.0
4,415,901	-		BT3425	0.29	-2.6
4,415,901	-		BT3425	0.29	-1.2
4,415,909	+		BT3425	0.29	-1.3
4,415,910	-		BT3425	0.29	-0.4
4,415,933	+		BT3425	0.31	-0.2
4,415,936	+		BT3425	0.31	-0.4
4,415,937	-		BT3425	0.31	-0.6
4,415,956	-		BT3425	0.32	+1.0
4,415,985	-		BT3425	0.34	+1.0
4,415,985	-		BT3425	0.34	-1.5
4,416,001	+		BT3425	0.35	-1.8
4,416,012	-		BT3425	0.36	-1.8
4,416,129	+		BT3425	0.43	-1.3
4,416,163	+		BT3425	0.45	-1.0
4,416,164	-		BT3425	0.45	+1.0
4,416,164	-		BT3425	0.45	+1.0
4,416,208	-		BT3425	0.48	-1.3
4,416,208	-		BT3425	0.48	-0.0
4,416,221	+		BT3425	0.48	+1.0
4,416,255	+		BT3425	0.51	-0.6
4,416,255	+		BT3425	0.51	-1.0
4,416,258	-		BT3425	0.51	-0.6
4,416,275	-		BT3425	0.52	-0.6
4,416,285	-		BT3425	0.52	-0.0
4,416,332	-		BT3425	0.55	-1.7
4,416,357	+		BT3425	0.57	-1.0
4,416,361	-		BT3425	0.57	-0.0