Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3546

Experiment: Stool_Day4_Mouse17

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day4_Mouse17
4,582,205	-		BT3545	0.43	-1.8
4,582,205	-		BT3545	0.43	-0.4
4,582,268	-		BT3545	0.47	+0.1
4,582,286	-		BT3545	0.48	-1.5
4,582,335	+		BT3545	0.52	+0.5
4,582,357	-		BT3545	0.53	-1.2
4,582,361	-		BT3545	0.53	-0.5
4,582,364	+		BT3545	0.53	-0.6
4,582,364	+		BT3545	0.53	+0.5
4,582,389	+		BT3545	0.55	-1.5
4,582,410	-		BT3545	0.56	+1.5
4,582,426	-		BT3545	0.57	-2.1
4,582,432	-		BT3545	0.58	-0.9
4,582,501	-		BT3545	0.62	-0.5
4,582,510	-		BT3545	0.63	-0.9
4,582,515	-		BT3545	0.63	-1.5
4,582,543	-		BT3545	0.65	-1.9
4,582,555	-		BT3545	0.65	-1.1
4,582,570	-		BT3545	0.66	-1.1
4,582,574	-		BT3545	0.67	-0.5
4,582,645	+		BT3545	0.71	+0.5
4,582,660	+		BT3545	0.72	-1.2
4,582,660	+		BT3545	0.72	-0.2
4,582,660	+		BT3545	0.72	-2.2
4,582,661	-		BT3545	0.72	+0.5
4,582,661	-		BT3545	0.72	-1.5
4,582,670	-		BT3545	0.73	+0.1
4,582,725	-		BT3545	0.76	-1.3
4,582,739	+		BT3545	0.77	-2.8
4,582,770	-		BT3545	0.79	-2.8
4,582,772	-		BT3545	0.79	-1.3
4,582,828	-		BT3545	0.83	-0.3
4,582,828	-		BT3545	0.83	-1.6
4,582,836	+		BT3545	0.83	-0.2
4,582,851	-		BT3545	0.84	-0.8
4,582,887	-		BT3545	0.86	-1.4
4,582,890	-		BT3545	0.86	-1.2
4,582,891	+		BT3545	0.87	-0.5
4,582,903	+		BT3545	0.87	-2.1
4,583,002	+				-1.1
4,583,006	-				-1.5
4,583,036	-				-1.7
4,583,036	-				+0.5
4,583,092	-				-0.9
4,583,158	+				+1.5
4,583,179	+				+0.5
4,583,213	+				+0.2
4,583,243	+				-0.5
4,583,279	-				-0.5
4,583,300	-				-0.4
4,583,337	+				-1.3
4,583,396	-				+0.5
4,583,455	+				+1.1
4,583,456	-				-1.6
4,583,456	-				-1.7
4,583,594	+		BT3546	0.13	-0.5
4,583,752	-		BT3546	0.19	-0.5
4,583,762	+		BT3546	0.19	+0.5
4,583,911	-		BT3546	0.24	-1.8
4,583,958	+		BT3546	0.26	-1.5
4,583,996	+		BT3546	0.27	-1.1
4,584,047	-		BT3546	0.29	+0.5
4,584,103	+		BT3546	0.31	-1.2
4,584,127	-		BT3546	0.32	+1.5
4,584,187	-		BT3546	0.34	-1.1
4,584,208	-		BT3546	0.35	-0.1
4,584,208	-		BT3546	0.35	-2.7
4,584,219	-		BT3546	0.35	-2.0
4,584,219	-		BT3546	0.35	+1.1
4,584,251	+		BT3546	0.36	-0.5
4,584,276	+		BT3546	0.37	-1.1
4,584,277	-		BT3546	0.37	-0.5
4,584,350	-		BT3546	0.40	-1.6
4,584,380	+		BT3546	0.41	-0.1
4,584,380	+		BT3546	0.41	-1.5
4,584,380	+		BT3546	0.41	-0.9
4,584,380	+		BT3546	0.41	-2.7
4,584,440	+		BT3546	0.43	-3.1
4,584,441	-		BT3546	0.43	-1.1
4,584,441	-		BT3546	0.43	-2.1
4,584,442	+		BT3546	0.43	-2.9
4,584,462	+		BT3546	0.43	-0.5
4,584,463	-		BT3546	0.43	-0.8
4,584,475	+		BT3546	0.44	-2.7
4,584,482	-		BT3546	0.44	-1.2
4,584,533	+		BT3546	0.46	-1.0
4,584,533	+		BT3546	0.46	-1.0
4,584,534	-		BT3546	0.46	-1.2
4,584,535	+		BT3546	0.46	-1.5
4,584,639	+		BT3546	0.50	-1.5
4,584,640	-		BT3546	0.50	-0.9
4,584,731	+		BT3546	0.53	-0.5
4,584,738	-		BT3546	0.53	+0.9
4,584,798	-		BT3546	0.55	-1.3
4,584,927	-		BT3546	0.59	+0.5
4,584,929	-		BT3546	0.60	-1.9
4,584,929	-		BT3546	0.60	-0.8
4,584,955	-		BT3546	0.60	-0.1
4,584,955	-		BT3546	0.60	-0.4
4,584,962	+		BT3546	0.61	-0.9
4,584,963	-		BT3546	0.61	-0.4
4,584,963	-		BT3546	0.61	-2.5
4,584,971	-		BT3546	0.61	-0.8
4,584,991	-		BT3546	0.62	-1.1
4,585,181	+		BT3546	0.68	-1.1
4,585,214	+		BT3546	0.69	-2.5
4,585,215	-		BT3546	0.69	-1.7
4,585,233	+		BT3546	0.70	-3.0
4,585,234	-		BT3546	0.70	-2.3
4,585,287	-		BT3546	0.72	-0.8
4,585,291	+		BT3546	0.72	-1.2
4,585,369	-		BT3546	0.75	-1.3
4,585,378	+		BT3546	0.75	-1.1
4,585,378	+		BT3546	0.75	-1.8
4,585,379	-		BT3546	0.75	+0.2
4,585,494	-		BT3546	0.79	-0.1
4,585,498	-		BT3546	0.79	-0.5
4,585,531	+		BT3546	0.80	-0.5
4,585,535	-		BT3546	0.80	-2.8
4,585,607	+		BT3546	0.83	+0.5
4,585,655	+		BT3546	0.85	-2.6
4,585,658	-		BT3546	0.85	-2.0
4,585,760	+		BT3546	0.88	-1.1
4,585,760	+		BT3546	0.88	-1.1
4,585,761	-		BT3546	0.88	-2.5
4,585,761	-		BT3546	0.88	-1.2
4,585,763	-		BT3546	0.88	-0.5
4,585,835	+				-1.7
4,585,836	-				-2.9
4,585,873	+				-1.0
4,585,883	-				-0.5
4,585,887	-				-2.0
4,585,889	-				-0.1
4,585,889	-				+0.7
4,585,908	+				-4.1
4,585,936	+				-0.5
4,585,988	-				-0.2
4,586,020	+				-2.5
4,586,021	-				-0.7
4,586,041	-				-0.7
4,586,041	-				-1.3
4,586,057	-				-2.8
4,586,057	-				-1.1
4,586,061	+				-0.5
4,586,129	-				-1.1
4,586,143	-				-0.9
4,586,150	-				-1.3
4,586,185	+				-0.5
4,586,213	-				-1.8
4,586,216	-				-0.3
4,586,220	+				-1.1
4,586,227	-				-0.1
4,586,237	-				+0.5
4,586,257	+		BT3547	0.11	-1.5
4,586,410	-		BT3547	0.35	-1.1
4,586,447	+		BT3547	0.41	-2.6
4,586,447	+		BT3547	0.41	-1.2
4,586,566	+		BT3547	0.59	-2.5
4,586,567	-		BT3547	0.59	-1.5
4,586,567	-		BT3547	0.59	-1.1
4,586,567	-		BT3547	0.59	-0.5
4,586,567	-		BT3547	0.59	+0.5
4,586,575	+		BT3547	0.61	-1.8
4,586,634	+		BT3547	0.70	+0.5
4,586,644	+		BT3547	0.71	-0.3
4,586,644	+		BT3547	0.71	-0.5
4,586,644	+		BT3547	0.71	-2.3
4,586,648	+		BT3547	0.72	-1.8
4,586,649	-		BT3547	0.72	-0.1
4,586,660	+		BT3547	0.74	+0.5
4,586,661	-		BT3547	0.74	-2.1
4,586,672	+		BT3547	0.76	-2.1
4,586,673	-		BT3547	0.76	-0.8
4,586,689	+		BT3547	0.78	-1.1
4,586,690	-		BT3547	0.79	-1.0
4,586,691	+		BT3547	0.79	+0.5
4,586,698	+		BT3547	0.80	-1.5
4,586,727	+		BT3547	0.84	-0.5
4,586,728	-		BT3547	0.84	-0.7
4,586,728	-		BT3547	0.84	-1.1
4,586,757	-		BT3547	0.89	-1.3
4,586,764	+				-1.6
4,586,823	-				-1.0
4,586,841	+				-1.6
4,586,936	-				-0.5
4,586,939	-				+0.5
4,586,946	-				-1.3
4,586,946	-				+0.5
4,586,947	+				-0.8
4,586,952	-				+2.5
4,587,074	+				-3.1