Experiment: Stool_Day4_Mouse17
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0603 and BT0604 are separated by 1 nucleotides BT0604 and BT0605 are separated by 1 nucleotides
BT0603: BT0603 - conserved hypothetical protein (NCBI ptt file), at 744,311 to 745,423
BT0603
BT0604: BT0604 - putative coenzyme F420-reducing hydrogenase (NCBI ptt file), at 745,425 to 746,612
BT0604
BT0605: BT0605 - putative polysaccharide export protein (NCBI ptt file), at 746,614 to 748,059
BT0605
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1
2 at 744.563 kb on - strand, within BT0603 at 744.631 kb on + strand, within BT0603 at 744.789 kb on + strand, within BT0603 at 744.943 kb on + strand, within BT0603 at 745.202 kb on + strand, within BT0603 at 745.222 kb on + strand, within BT0603 at 745.325 kb on + strand at 745.452 kb on - strand at 745.477 kb on + strand at 745.478 kb on - strand at 745.547 kb on + strand, within BT0604 at 745.547 kb on + strand, within BT0604 at 745.626 kb on - strand, within BT0604 at 745.664 kb on + strand, within BT0604 at 745.682 kb on + strand, within BT0604 at 745.682 kb on + strand, within BT0604 at 745.683 kb on - strand, within BT0604 at 745.833 kb on - strand, within BT0604 at 745.839 kb on - strand, within BT0604 at 745.860 kb on - strand, within BT0604 at 746.109 kb on - strand, within BT0604 at 746.167 kb on - strand, within BT0604 at 746.167 kb on - strand, within BT0604 at 746.424 kb on - strand, within BT0604 at 746.545 kb on - strand at 746.570 kb on - strand at 746.601 kb on - strand at 746.690 kb on + strand at 746.691 kb on - strand at 746.699 kb on + strand at 746.711 kb on + strand at 746.716 kb on - strand at 746.749 kb on + strand at 746.838 kb on + strand, within BT0605 at 746.873 kb on + strand, within BT0605 at 746.915 kb on + strand, within BT0605 at 746.932 kb on + strand, within BT0605 at 746.935 kb on + strand, within BT0605 at 746.973 kb on + strand, within BT0605 at 746.976 kb on - strand, within BT0605 at 747.018 kb on - strand, within BT0605 at 747.106 kb on - strand, within BT0605 at 747.116 kb on - strand, within BT0605 at 747.149 kb on + strand, within BT0605 at 747.242 kb on + strand, within BT0605 at 747.295 kb on - strand, within BT0605 at 747.441 kb on - strand, within BT0605
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day4_Mouse17 remove 744,563 - BT0603 0.23 -2.0 744,631 + BT0603 0.29 +0.0 744,789 + BT0603 0.43 +0.0 744,943 + BT0603 0.57 -1.4 745,202 + BT0603 0.80 -1.0 745,222 + BT0603 0.82 +1.6 745,325 + +0.6 745,452 - -2.6 745,477 + -2.3 745,478 - -1.8 745,547 + BT0604 0.10 -0.7 745,547 + BT0604 0.10 -2.5 745,626 - BT0604 0.17 -0.4 745,664 + BT0604 0.20 -1.4 745,682 + BT0604 0.22 -2.6 745,682 + BT0604 0.22 -1.0 745,683 - BT0604 0.22 -0.4 745,833 - BT0604 0.34 -2.4 745,839 - BT0604 0.35 -0.4 745,860 - BT0604 0.37 +0.0 746,109 - BT0604 0.58 -0.2 746,167 - BT0604 0.62 -1.4 746,167 - BT0604 0.62 -1.2 746,424 - BT0604 0.84 -0.4 746,545 - +0.6 746,570 - +2.2 746,601 - -2.5 746,690 + +0.2 746,691 - -1.0 746,699 + -0.4 746,711 + -0.4 746,716 - -2.2 746,749 + -1.3 746,838 + BT0605 0.15 +0.6 746,873 + BT0605 0.18 +1.6 746,915 + BT0605 0.21 -0.5 746,932 + BT0605 0.22 +0.6 746,935 + BT0605 0.22 +0.6 746,973 + BT0605 0.25 -2.0 746,976 - BT0605 0.25 -1.0 747,018 - BT0605 0.28 +2.6 747,106 - BT0605 0.34 -1.7 747,116 - BT0605 0.35 -1.7 747,149 + BT0605 0.37 +0.0 747,242 + BT0605 0.43 +0.6 747,295 - BT0605 0.47 -0.4 747,441 - BT0605 0.57 +0.0
Or see this region's nucleotide sequence