Experiment: Stool_Day3_Mouse19
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4108 and BT4109 are separated by 9 nucleotides BT4109 and BT4110 are separated by 242 nucleotides
BT4108: BT4108 - conserved hypothetical protein (NCBI ptt file), at 5,371,714 to 5,372,913
BT4108
BT4109: BT4109 - putative pectinesterase precursor (NCBI ptt file), at 5,372,923 to 5,373,891
BT4109
BT4110: BT4110 - putative pectinesterase precursor (NCBI ptt file), at 5,374,134 to 5,375,744
BT4110
Position (kb) 5372
5373
5374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5371.932 kb on - strand, within BT4108 at 5371.934 kb on - strand, within BT4108 at 5371.938 kb on + strand, within BT4108 at 5371.979 kb on - strand, within BT4108 at 5372.010 kb on + strand, within BT4108 at 5372.011 kb on - strand, within BT4108 at 5372.013 kb on + strand, within BT4108 at 5372.081 kb on - strand, within BT4108 at 5372.188 kb on + strand, within BT4108 at 5372.219 kb on - strand, within BT4108 at 5372.221 kb on - strand, within BT4108 at 5372.236 kb on + strand, within BT4108 at 5372.275 kb on + strand, within BT4108 at 5372.302 kb on - strand, within BT4108 at 5372.320 kb on + strand, within BT4108 at 5372.321 kb on - strand, within BT4108 at 5372.451 kb on - strand, within BT4108 at 5372.519 kb on + strand, within BT4108 at 5372.636 kb on - strand, within BT4108 at 5372.658 kb on + strand, within BT4108 at 5372.668 kb on - strand, within BT4108 at 5372.758 kb on - strand, within BT4108 at 5372.760 kb on - strand, within BT4108 at 5372.824 kb on + strand at 5372.935 kb on - strand at 5373.127 kb on + strand, within BT4109 at 5373.127 kb on + strand, within BT4109 at 5373.176 kb on + strand, within BT4109 at 5373.209 kb on - strand, within BT4109 at 5373.283 kb on - strand, within BT4109 at 5373.346 kb on - strand, within BT4109 at 5373.402 kb on + strand, within BT4109 at 5373.403 kb on - strand, within BT4109 at 5373.403 kb on - strand, within BT4109 at 5373.487 kb on - strand, within BT4109 at 5373.517 kb on - strand, within BT4109 at 5373.535 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.870 kb on + strand at 5373.885 kb on + strand at 5373.890 kb on - strand at 5373.890 kb on - strand at 5373.890 kb on - strand at 5373.956 kb on + strand at 5373.996 kb on - strand at 5374.006 kb on + strand at 5374.032 kb on - strand at 5374.049 kb on - strand at 5374.059 kb on - strand at 5374.064 kb on - strand at 5374.116 kb on - strand at 5374.152 kb on + strand at 5374.181 kb on + strand at 5374.181 kb on + strand at 5374.182 kb on - strand at 5374.213 kb on + strand at 5374.214 kb on - strand at 5374.214 kb on - strand at 5374.223 kb on + strand at 5374.223 kb on + strand at 5374.311 kb on + strand, within BT4110 at 5374.311 kb on + strand, within BT4110 at 5374.558 kb on - strand, within BT4110 at 5374.641 kb on - strand, within BT4110 at 5374.641 kb on - strand, within BT4110 at 5374.692 kb on - strand, within BT4110 at 5374.692 kb on - strand, within BT4110 at 5374.761 kb on + strand, within BT4110 at 5374.792 kb on + strand, within BT4110 at 5374.830 kb on + strand, within BT4110 at 5374.830 kb on + strand, within BT4110 at 5374.848 kb on + strand, within BT4110 at 5374.849 kb on - strand, within BT4110 at 5374.849 kb on - strand, within BT4110 at 5374.849 kb on - strand, within BT4110
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day3_Mouse19 remove 5,371,932 - BT4108 0.18 +2.0 5,371,934 - BT4108 0.18 -1.2 5,371,938 + BT4108 0.19 -0.6 5,371,979 - BT4108 0.22 +0.4 5,372,010 + BT4108 0.25 -1.5 5,372,011 - BT4108 0.25 -0.3 5,372,013 + BT4108 0.25 -2.4 5,372,081 - BT4108 0.31 +0.4 5,372,188 + BT4108 0.40 -0.0 5,372,219 - BT4108 0.42 -0.2 5,372,221 - BT4108 0.42 -1.9 5,372,236 + BT4108 0.43 -0.6 5,372,275 + BT4108 0.47 +0.4 5,372,302 - BT4108 0.49 -2.5 5,372,320 + BT4108 0.51 -2.2 5,372,321 - BT4108 0.51 -1.8 5,372,451 - BT4108 0.61 -1.5 5,372,519 + BT4108 0.67 +2.0 5,372,636 - BT4108 0.77 +0.4 5,372,658 + BT4108 0.79 +0.4 5,372,668 - BT4108 0.80 -0.3 5,372,758 - BT4108 0.87 -1.6 5,372,760 - BT4108 0.87 -1.9 5,372,824 + -0.1 5,372,935 - -0.6 5,373,127 + BT4109 0.21 -1.4 5,373,127 + BT4109 0.21 +2.7 5,373,176 + BT4109 0.26 +0.2 5,373,209 - BT4109 0.30 +2.0 5,373,283 - BT4109 0.37 +2.0 5,373,346 - BT4109 0.44 +1.1 5,373,402 + BT4109 0.49 +1.4 5,373,403 - BT4109 0.50 +0.8 5,373,403 - BT4109 0.50 +1.4 5,373,487 - BT4109 0.58 +1.4 5,373,517 - BT4109 0.61 +0.4 5,373,535 - BT4109 0.63 +0.4 5,373,575 - BT4109 0.67 +0.4 5,373,575 - BT4109 0.67 +1.4 5,373,575 - BT4109 0.67 -1.9 5,373,575 - BT4109 0.67 +1.4 5,373,870 + +0.4 5,373,885 + -0.0 5,373,890 - +0.4 5,373,890 - -0.2 5,373,890 - -0.6 5,373,956 + -0.0 5,373,996 - -0.4 5,374,006 + +0.2 5,374,032 - -0.4 5,374,049 - -0.9 5,374,059 - +0.2 5,374,064 - -1.6 5,374,116 - +0.4 5,374,152 + -2.6 5,374,181 + -1.8 5,374,181 + -2.2 5,374,182 - -1.2 5,374,213 + -2.2 5,374,214 - +0.1 5,374,214 - -1.4 5,374,223 + +0.4 5,374,223 + +1.0 5,374,311 + BT4110 0.11 -1.2 5,374,311 + BT4110 0.11 -0.8 5,374,558 - BT4110 0.26 -0.8 5,374,641 - BT4110 0.31 +0.4 5,374,641 - BT4110 0.31 -1.9 5,374,692 - BT4110 0.35 -0.6 5,374,692 - BT4110 0.35 -0.8 5,374,761 + BT4110 0.39 -1.2 5,374,792 + BT4110 0.41 -1.7 5,374,830 + BT4110 0.43 -1.0 5,374,830 + BT4110 0.43 -2.4 5,374,848 + BT4110 0.44 +0.4 5,374,849 - BT4110 0.44 -0.0 5,374,849 - BT4110 0.44 -0.8 5,374,849 - BT4110 0.44 -2.8
Or see this region's nucleotide sequence