Experiment: Stool_Day3_Mouse7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0335 and BT0336 overlap by 11 nucleotides BT0336 and BT0337 are separated by 77 nucleotides
BT0335: BT0335 - putative ATPase (NCBI ptt file), at 398,928 to 400,481
BT0335
BT0336: BT0336 - conserved hypothetical protein (NCBI ptt file), at 400,471 to 401,913
BT0336
BT0337: BT0337 - conserved hypothetical protein (NCBI ptt file), at 401,991 to 402,473
BT0337
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 399.584 kb on - strand, within BT0335 at 399.767 kb on - strand, within BT0335 at 399.775 kb on - strand, within BT0335 at 399.877 kb on + strand, within BT0335 at 399.883 kb on + strand, within BT0335 at 400.016 kb on + strand, within BT0335 at 400.020 kb on + strand, within BT0335 at 400.092 kb on + strand, within BT0335 at 400.124 kb on + strand, within BT0335 at 400.127 kb on - strand, within BT0335 at 400.405 kb on - strand at 400.465 kb on - strand at 400.465 kb on - strand at 400.479 kb on + strand at 400.483 kb on + strand at 400.498 kb on + strand at 400.571 kb on - strand at 400.608 kb on - strand at 400.699 kb on - strand, within BT0336 at 400.785 kb on - strand, within BT0336 at 400.787 kb on + strand, within BT0336 at 401.088 kb on + strand, within BT0336 at 401.163 kb on + strand, within BT0336 at 401.226 kb on - strand, within BT0336 at 401.230 kb on - strand, within BT0336 at 401.356 kb on + strand, within BT0336 at 401.388 kb on + strand, within BT0336 at 401.457 kb on - strand, within BT0336 at 401.800 kb on - strand at 401.822 kb on - strand at 401.875 kb on - strand at 401.879 kb on - strand at 401.893 kb on - strand at 401.967 kb on - strand at 401.996 kb on - strand at 401.999 kb on + strand at 402.130 kb on - strand, within BT0337 at 402.146 kb on + strand, within BT0337 at 402.217 kb on - strand, within BT0337 at 402.366 kb on - strand, within BT0337 at 402.641 kb on - strand at 402.748 kb on + strand at 402.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day3_Mouse7 remove 399,584 - BT0335 0.42 -0.1 399,767 - BT0335 0.54 +1.5 399,775 - BT0335 0.55 -1.5 399,877 + BT0335 0.61 -0.5 399,883 + BT0335 0.61 +0.5 400,016 + BT0335 0.70 -2.2 400,020 + BT0335 0.70 +2.1 400,092 + BT0335 0.75 +0.5 400,124 + BT0335 0.77 +0.8 400,127 - BT0335 0.77 -1.9 400,405 - -1.9 400,465 - -1.5 400,465 - +0.5 400,479 + -0.9 400,483 + -1.1 400,498 + -0.9 400,571 - -0.9 400,608 - +0.9 400,699 - BT0336 0.16 -1.5 400,785 - BT0336 0.22 -1.9 400,787 + BT0336 0.22 -3.1 401,088 + BT0336 0.43 -1.9 401,163 + BT0336 0.48 -2.5 401,226 - BT0336 0.52 -2.1 401,230 - BT0336 0.53 +0.5 401,356 + BT0336 0.61 -1.4 401,388 + BT0336 0.64 -1.1 401,457 - BT0336 0.68 -2.6 401,800 - -1.5 401,822 - +0.5 401,875 - -3.7 401,879 - -0.8 401,893 - -1.1 401,967 - -1.1 401,996 - -1.8 401,999 + -0.5 402,130 - BT0337 0.29 -1.3 402,146 + BT0337 0.32 +0.1 402,217 - BT0337 0.47 -0.5 402,366 - BT0337 0.78 -1.1 402,641 - -1.3 402,748 + -2.2 402,827 - -1.1
Or see this region's nucleotide sequence